Detailed information on CNT0000658 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZPS7|TMN3_ARATH, E-value = 1e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000658

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)16.88321.22318.45719.6923.61220.22115.82630.17650.713152.07864.73658.662118.5084.6329.362leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0102030405060708090100110120130140150160

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MRRTNESAAAMGRSTLALVLAILISFQGTHVRSDASDHRYKDGDSVPLYANKVGPFHNPSFVFLLS

>peptide 2 (32 aa)
MPPITVTRMETPSLFTPTKLVPFTTPVSCFYCL

>peptide 3 (33 aa)
ILNKFLAYCPCLFLFLYPSDLNAKNERECSGNG*

Sequence

>CNT0000658
ATACTGAATAAATTTCTTGCTTATTGTCCTTGTCTGTTTCTTTTTCTTTATCCATCTGATCTGAATGCGAAGAACGAACGAGAGTGCAGCGGCAATGGGT
AGAAGCACTTTGGCTTTGGTTCTCGCGATTCTGATCTCTTTTCAGGGAACCCACGTTAGATCCGATGCCTCCGATCACCGTTACAAGGATGGAGACTCCG
TCCCTCTTTACGCCAACAAAGTTGGTCCCTTTCACAACCCCAGTTTCGTGTTTTTATTGTCTCG