Detailed information on CNT0000665 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000665

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)32.53932.22329.28254.14833.75420.15216.81418.69746.17649.48354.37142.25145.2930.04629.399leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)051015202530354045505560

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MATPSDPSNQEAVVRRRNNGPPIKFLLPLIYAPVLPLIRLSLRHKPVLRDRLFTAVLAGAFAHGFYLVTDLYDIESK*

>peptide 2 (30 aa)
MEFGGCSLIFFFSLDINAISCQLDVDFCNN*

>peptide 3 (33 aa)
MFQTFLRHHLHHNLRSSINFFDHYLQLNILVMP*

>peptide 4 (34 aa)
MIGGIKKKTYSPDMVYSCGWWVGTIPSVLRLESH*

>peptide 5 (32 aa)
MLFLVSLMLISVIIRWSKWIQRINMHVLYRHG*

Sequence

>CNT0000665
AAACAGCCCTATTCTTTTAGTCGATGATCGGAGGGATTAAAAAAAAAACCTATTCTCCTGATATGGTCTACTCTTGTGGGTGGTGGGTAGGAACAATTCC
CAGTGTTCTCAGATTGGAATCCCATTGACTCTACCATGGCCACGCCCTCTGATCCTTCCAACCAAGAAGCTGTTGTAAGAAGGAGAAACAACGGACCCCC
TATTAAGTTCCTCCTTCCTCTCATATATGCCCCTGTTCTCCCTCTAATTCGTCTATCGCTGCGGCATAAACCCGTCTTGAGAGATCGCTTGTTTACTGCT
GTGTTGGCTGGGGCCTTTGCTCATGGCTTCTATTTGGTAACAGATCTGTATGATATTGAGAGCAAGTGATTAAGCAGAGCATGTTTCAGACATTTCTTCG
GCATCATTTACATCACAACCTCAGGTCTTCAATAAATTTCTTCGACCACTATTTACAGCTAAACATTCTGGTAATGCCTTAAATAGCATTGGTCGATTTT
CAAGATGTAAGAATATTTTTTTCAATTATATTGACAGATTATTATGTTATGTACGCCTTATAGTTGCATCTTGTATTGCGGATTTTGCTTTCTCTAGAAT
AACTATGGAATTCGGAGGCTGTTCTTTGATCTTTTTTTTCTCTCTTGATATCAATGCTATTTCTTGTCAGCTTGATGTTGATTTCTGTAATAATTAGATG
GTCTAAGTGGATTCAGAGGATCAATATGCATGTCCTTTATCGCCATGGATAATCTTGTTCATATTTTATTTGTAGTTGGATCTGATGTATACCTTCAATG
GGGGGAAAATGCTTGATTAGATGTCTTGTGTCTTCATTTTACATGATGCCGGATTAGATTAGATGATATTCGGATTTAAATGTGGTTTGTGTTTCATTTA
CGTGGCTTCACATCTGTCTTTAGCAGTGCATTGCTC