Detailed information on CNT0000669 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q969N2|PIGT_HUMAN, E-value = 5e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000669

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5420.870.8880.9480.2070.7791.7270.5720.6370.5090.7390.8070.2611.4860.601leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.9

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKDGVDLIQYHATMQSLQELNCGQFLMSLYIRLALLGKI*

>peptide 2 (94 aa)
MTESEYVSLIGLLKSSTCSVLRILEYKHTSCLCPLFSMPTCYVLGEETTFPSTLVFHIYLAQDTIIQLLLWILCLFFPAGLKIPHLYNWNIEHL*

>peptide 3 (36 aa)
SHCLPSHSFFCLIILIQLLTSCVLLPVDASKVVFLH*

>peptide 4 (42 aa)
MKLSFTQGRWNYERWGGFDSISCNNAKPPGVELWAVFDVPLH*

>peptide 5 (41 aa)
MGSFVCLYEMKLYIHHLQNFGMQEMILSLKLEKCGCLFEMKF

>peptide 6 (36 aa)
MYNTNLPLPNVPLLSVNISSWYSYSTFYSGLMILAF*

>peptide 7 (34 aa)
MVHCHVKSKKCGCLYEMKFYNHLQNFGIQKRPCP*

Sequence

>CNT0000669
TTAGCCACTGCCTTCCCTCTCATTCATTCTTTTGTTTAATTATTCTTATTCAGCTGCTAACGTCTTGTGTTCTTCTACCTGTAGATGCAAGCAAAGTAGT
GTTCCTTCACTGAGTGCTATCTAAACTATATCTGCCAAGCTTAGAGGCAGACCGTTGGAATCAAGTCTGCCCTCTCCCTCGTCATCATTCTTTGTTAGTC
CAAAATTGATTCTTAGAGTACTACTGGTTGCAGGAATTTGCCGTTACATGGCAATACTATTCACAATGATATCTTTCAACTAAGTAGTTTTACTTGTACT
ATAGTCTAATTGCATGTATTTTCATGTACAATACAAACCTTCCACTGCCCAATGTGCCTTTACTTTCTGTTAATATATCATCTTGGTATTCTTATTCCAC
TTTTTATAGTGGGCTCATGATATTAGCTTTCTAATTTATGTATGCATGGTTTAAAACTGTTTTTCAGGATGGTAGCACAACACTGTGAAGAGTTGATTTA
GTTAAGAGGAGCTTACTATCATAGAAGCTGAATATCCAATGACTGAAAGTGAGTACGTAAGCCTAATTGGCCTTCTAAAATCAAGCACTTGCTCAGTCCT
TCGAATACTAGAGTACAAACATACATCTTGTCTCTGCCCCCTCTTCTCTATGCCAACATGTTATGTGCTAGGTGAAGAAACAACCTTTCCTTCAACTCTT
GTATTTCACATATATTTGGCACAGGATACAATCATACAACTTCTCCTGTGGATATTGTGCCTTTTTTTTCCAGCAGGTTTAAAGATACCCCATCTATACA
ATTGGAATATCGAACACCTCTAGTTGAGCATTCTAATCTCTGCAGTGAAATACTGGTTCAGAAGTATCATATTAAAGCAATGAAGTTATCTTTTACCCAA
GGTCGATGGAACTATGAAAGATGGGGTGGATTTGATTCAATATCATGCAACAATGCAAAGCCTCCAGGAGTTGAATTGTGGGCAGTTTTTGATGTCCCTC
TACATTAGGTTGGCGCTTCTTGGAAAAATTTAAGCCATTCACTATCAGGTCTCTTGTGCTTCAGTCAACTTCCTGGAGTCTTCTACCACTTATTCTGCTC
CTGAATTGGCATTTCAAATAGCTTTGGGTAGTTTAAGATATGGTACACTGCCACGTGAAATCGAAAAAGTGTGGGTGCCTCTACGAGATGAAATTCTATA
ATCATTTGCAAAATTTTGGTATACAAAAAAGGCCTTGCCCCTAAAATGGGATCGTTTGTTTGTCTCTATGAGATGAAATTATATATTCATCATCTGCAAA
ATTTTGGTATGCAAGAAATGATCTTGTCCCTTAAATTGGAAAAATGTGGTTGCCTCTTTGAGATGAAATTC