Detailed information on CNT0000670 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000670

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00001.298002.9060.190.15200.181000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SLHHRRYLFSLCFTCSFFNTNQTLSFRTHYI*

>peptide 2 (47 aa)
ARSITADICFPCALRVRSSIQTKLSRFAHIIYKHISTSLFSIDLHHL*

>peptide 3 (141 aa)
LAPSPPIFVFLVLYVFVLQYKPNSLVSHTLYINISPLRSSQSISITFNVIFAFISFKNLQALLIVSMRRNCNLELALFLPSDSGPRHHHSMVEEASEISP
IQNFFHHHHRQEQQQQQPLTIFYDGNICVADVTELQVCVYM*

Sequence

>CNT0000670
GCTCGCTCCATCACCGCCGATATTTGTTTTCCTTGTGCTTTACGTGTTCGTTCTTCAATACAAACCAAACTCTCTCGTTTCGCACACATTATATATAAAC
ATATCTCCACTTCGCTCTTCTCAATCGATCTCCATCACCTTTAACGTTATCTTCGCTTTTATATCTTTCAAAAACCTTCAAGCCCTTTTGATTGTAAGTA
TGAGGAGGAACTGCAACTTGGAACTTGCCCTTTTTCTTCCCTCTGATTCTGGCCCCCGCCACCACCACTCAATGGTTGAAGAAGCTAGTGAAATAAGCCC
AATCCAAAATTTCTTCCATCACCACCACCGCCAGGAACAGCAACAGCAACAGCCGCTCACCATTTTCTATGATGGAAATATTTGTGTTGCGGATGTCACA
GAGCTTCAGGTATGTGTATATATGTAGATTTTTTTTTTAATTTCTAGTTTTTGACCCTTAATCATTCGTGTGGGCCGGCCTTTGTTTGTGGTTATACTAA
GTAGCTATTACGTTGGTATGTGTTATTTTTAGTAACTCTAACTCATTTGGATAATTACCTGAAAAGTCCTAGGGTTAGGCCACCGTAGTTAATTATATAT
CTGTATATAGTATTGGTTCTTCCTCCAATGTAATCAGATATAGAGAATGTGTTGTCATGTTTCGGTAAGAGACTATGGATTACTGAACCCATTACTCATC
TACAATTACTCAAAACAATATTGAAAGTCGTTGTTATTGGATTTGGCTCCTAACTCCTAAGGAG