Detailed information on CNT0000673 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FZB1|Y5188_ARATH, E-value = 7e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000673

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.930.6220.5080.3390.3710.6755.0133.3380.0760.18200.072000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQMIKTSTESEAFTFYQYLFLHSKSGYKHEYVLCNCP*

>peptide 2 (32 aa)
MVHCSKSSFPNNPFKISGHAQDFGIERNHCYY*

>peptide 3 (30 aa)
MLIMMCRVWINYNKLILEIKISIFKNIPSV*

>peptide 4 (38 aa)
MKAPPSDATSGTTTLFPFLLLHDEPDLICQGLCFLLNH*

Sequence

>CNT0000673
AGGTTGACCTGTAATTATCTCAAACAAAACTATCCCAAAACTGAAAACATCACTTTTTTCCCTCAATTTGTGTGATCTATTGTACCTGCAGAATAAAAAT
TTACAACTCAGTTTATATTAAACGTTATCTTAAAGACTCTTGACTTTTGCCTCCTGTGTTTGAGTGAAAATAATAACTTACTCTGGGTCAAGATATCCAA
GGGTGCCAGCTACCACTGTGGTCATATGGGTGTCATCTTCATCTGAGTAGATCTTTGACAACCCAAAATCAGCTAGTTTACCCCGGAATTTTTCATTCAG
TAAGATGTTTTTAGACTTAACATCTCTGTGAACAATCGGCATATTGCAGCCATGATGCAGGTACTCCAATCCTACAGTTTAAAGTTCAAGTTACGTTTTG
TTGCATAAAATTCTGACTCTGACTCTCAAAGAAAGAGGGGAGGGGCAAAAGGATTCTTTCGATCCTTACCTTCTGCAGCATCCACTGCAATTTGAATTCG
TTGGTTCCAACTCAATATATTTTTGCTTTTGCCTACATTTTTTAGAATCCACCAAGGAATGCATGAATTTTAAATCGAAATAAAAAGAAAGGCATCATTC
TTTTCTTGCATTTTGGTGCAGAATATCTAGAAAATTTGTTTTCCAATACATATAACTGATCTTTGACTCAATTTTTAGGCTTCATCTAAATGTATCTGAA
CTTGAATTGCTTCATATTTTGTTGGCATTTATTGACTGTTTAGCCGTTTTATGCAGATGATCAAGACATCTACAGAATCAGAAGCATTTACTTTCTATCA
GTACCTTTTTTTACATAGCAAAAGTGGATACAAACATGAATACGTATTATGTAATTGCCCCTAAATTGTAACACTGAAGAGAAATAAAATTAAATGGACT
AAAGTAATCTTAAACAATACCTGATAAATGCTTTGCTAAGTCTCCATTAGCCATATACTCATAGATGAGAGCCATATTTTCGCCATCATCACAATATCCT
ATCAGAGCAGTCAAGAATTTATGATGAACTACAGCAAGAAGTTTGGCCTGAAAATCAGAAAGCAACAATTCATTCAGTTAACACAAATAAAATATCATTA
GCGAGTATATATATAATTATGATGATATTTGAAGTTAATCATATTACCTCTGCCTGAAATTGCAGATATCCTTGAGCTGAGGGAGAGAGCATTTTGACAG
CTACCTCAGTATCATCTATCCAGCCATGGTACACTGTAGCAAATCCTCCTTTCCCAACAACCCTTTCAAAATTTCTGGTCATGCTCAAGACTTCGGCATA
GAAAGAAATCACTGTTATTACTAGTATCATGAAAGCTCCACCAAGTGATGCCACCAGTGGAACTACAACCTTATTCCCATTCTTGTTGTTGCATGATGAA
CCTGATTTGATATGCCAGGGGCTATGTTTCCTATTAAACCACTGAAAGATAAGTTCCTAAAAGCATGAATGTAAGGTTCATCAATATTTATTGAAGATAA
AACTGTGAAGTTGCAGTTAAAACTAAAGGATCAGTATATGTGTATTTCAAGCCAAGCCAAACTTACAAGTATATGATCCTTGGTGAATCAGATTCAGCAT
AGCTGCAGTTAAGACCATCCCACAAGTAAGCCAGTGGGGTACAAGGATCTCCTTGCCAGTTTCTCTTGATCCCATAGATTGACTTGACATTTATGATACC
ATCAACTATTATCATAAATATAAGTAGGTCAGGCAGAAAATGTAAAACTATGAGTAATAATAAGACTAGTGCATGCTAATAATGATGTGCAGGGTCTGGA
TCAATTATAATAAGTTGATTTTAGAAATAAAAATCAGCATATTTAAAAACATACCATCTGTTTGATATGTTTCTGATAGTGAGAAGTTTTTTGTCATGTA
TATCTCGATGGCGTTGA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G42910.1 Uncharacterized protein protein coding CNT0000673 1376 514 CDS Cis
GLYMA13G42910.1 Uncharacterized protein protein coding CNT0000673 3510 1301 CDS Cis