Detailed information on CNT0000674 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4JUL9|ARPC4_ARATH, E-value = 1e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000674

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7852.2171.56800.9321.0691.9131.3081.0831.9981.5941.3060.8881.5160.66leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYKCIFPGFIKELEQLWLQLCMLHTLEDH*

>peptide 2 (42 aa)
MKLASVNPIFYDLASDLDTLLVRPEVRIEEENNFHVLVAHIL*

>peptide 3 (65 aa)
MAIRTDLKSNFSSSVGMIVVYRVLFLVIIKIKEKMKPVVVSLSCMSASPKRTIQVLENPNATPLH*

>peptide 4 (37 aa)
MLMISIIFFILISFDPTLELSLTPSLDALLTDNFLHV*

>peptide 5 (82 aa)
MTNCYLTISFLFYCTAKFDLYYVQVHFSWFHQRIRTIMATTLYVAYIRGSLIQKRIFNLHGLIYVGCMSFDAIVQISFDVII*

>peptide 6 (33 aa)
MSACCFCWQGYDISFLITNYHCEDMTLASFLKF*

>peptide 7 (38 aa)
MKLTWSLWIFHTTSDYLLDNSVSFFLQGQRPNVFSEEV*

>peptide 8 (29 aa)
FKNNLITMYFWDKLENILTMSESMSLKTY*

Sequence

>CNT0000674
ATTTAAAAACAATTTAATTACCATGTATTTTTGGGATAAACTTGAAAACATATTGACCATGAGTGAGTCAATGAGCTTGAAAACATATTGACCAAAAAAT
TTCTAAGATTTTTGTCAATGAGAGTCGAGGCTTTCCAAGTACTGAGGAGAAAGCTTGTTCAGGTTTAGCATTAATTTATATACTTCCATTTTTTTTTTGG
TAACTTGTTAGTGATCATTGATGTCAGCTTGTTGCTTCTGTTGGCAGGGATATGACATTAGCTTCCTTATAACAAATTACCACTGTGAGGATATGACATT
AGCTTCCTTTTTAAAATTTTAGTTTAGGAAATTAGCTTCAAGTTCAAGCCAAGGCTGAAGGAATACAAATCAGTGACCATTTAACTTTTTAGTTCTTGTC
AATGAAGCTTGCTTCCGTGAATCCCATTTTTTATGACTTGGCATCAGATCTAGACACCCTCTTGGTTAGACCAGAGGTGAGAATTGAAGAAGAAAACAAT
TTCCATGTTCTAGTGGCACATATATTATAAGTAGTTGAATTATCAAATTAAAATGTCTAATCATGAAATTAACTTGGTCTCTTTGGATTTTCCACACTAC
TAGTGACTATCTTTTGGATAATTCAGTCTCGTTTTTTCTTCAAGGGCAGAGGCCAAATGTGTTCTCTGAGGAGGTATAAACAGAAATAGCCAAATAAATA
AATAAATTATTTAGCTGGTAATTAATTATCTGTTATTGTTAACAAATCAATATTTGCAAGATGGGCTGCTTCACTCTGCATGTGGTGTGCTTGATTATAG
AGCCCCAGAGGTATATATATTACTAGCTTTTATTTATTTCTTAAACTTCAATACAAATTCAGTTTCTCTGTAATAAGATATATATGTTTTGGGTATTGAA
AATTAACTTGTTCATTCTCCAGGCTGTCGTTTGATCGAAGGAGGCCAGTAATGTTGATGATTTCGATCATTTTTTTCATTTTGATTTCTTTTGATCCAAC
CTTAGAATTGTCGTTGACTCCTTCACTTGATGCTTTGTTGACTGACAATTTTTTGCATGTTTGAGATTCATTTCTAGATTTCTTTGAGTTATCTTGTTTA
CCTTCTAATTCTTATTGCATACCACAATATCCGAGAAGAGAAAAATTAATTTGTGTTTGAAATTTACTTTATAATAGCACATATATATGATATGTATATA
GCAGAAATAAGGAAGTTGGAGATCATAGACAGTTGCCTCTTCAATTGAGAATCCATTGGCCATGGTAGTTGGTAGAAATAAGGAAGAGAAAGTGACTAGA
GGGATTAAAAGAATGAATTGAAAAAACAAAGAGAAACATCCTTCTGTGTTGCAAGCCATGAAAGCACCAAGATATAATATTCAATTTACTGCATAATCAT
GATTTAATTTATTTGACTTGATGTTAAAACTCTTGTTTTGATTTGTCATATATGTTTTTTTGTTGAATTTCATTTTGCCTTCAATTGGAGGTTTGGTGAA
CTCTGGATTACCATGACTATTGTCAAGTTAAATGCAATCTTTTCAAAATGATGCTGGTAGACTCAGTCTAAAGAAGAACAAGAACGACAGCTTCTTGAAA
TGATATAGAAGTTTCAGGTGCCTACATCATATTGATAGGCTTGTTTGCCCTTCAACGTTATGGCACATACAAGGTTAATTTCTTTACTTGGTGAACATTT
GAACCCAGCAATCGTACAAGCATAATTTTTCAGCTTCAAGTAAGGCAAGCTCGAAGGAATCAAAACGAATTGATAGTCTATTCTATTCATATGCCAATGG
GTCTACCGGGTTGATTGAGTAAGTGTGCTTCATCCAAGACTGTTTGTTTTCTTTCCTCCATTCAATATGCATATATCAAATTGCATTATCCTGTTGTTGT
TTTCTTAATTCAAGTTTCAAACCTTGGACATGGATCCAGTGGCAGATCTAGGACAATCTATTTAAAGAATAAAAATTAACAAGTATTATCATGAAAAGAG
GGGAAAATTAAGGGCAGGGGTTCAAATATGAAAAATTAGGAGGGACAAAATATTGGATTGAAAGTGAGGGGTGCATGTGCAGCCCCTCATTTAAGTGTGG
ATGCGCCACTGCATGAATCTGTTGGGGATAAATAGATTGTCCTAGATCTGGGGTCAATAAAGAGCTTACTGCATCCTCAACAAAAGCATGACTTGAGAAA
ATGGGAATCAAGTATATATAGATGTGGACAAAGGTAATAAAATCATTGAATGTAGCTATTAGATCATAACTACATATTTGTATATATACCTTGTGTGAGT
GAAATGACAAATTGTTATTTAACTATAAGTTTTCTTTTCTATTGTACTGCTAAATTTGATTTGTATTATGTACAAGTGCATTTTTCCTGGTTTCATCAAA
GAATTAGAACAATTATGGCTACAACTTTGTATGTTGCATACATTAGAGGATCATTAATTCAAAAAAGGATATTCAATTTGCATGGACTTATATATGTAGG
ATGCATGTCATTTGATGCTATTGTTCAGATTTCATTTGATGTTATTATTTAATTTGCATGGTCTGATTTAATTTATAGGTACCAGAGATCAATGTAAAAA
AAATGCATCAATAAAACGAAGAAAATAAAAAAAAAAACTTAGACATACAAAGACGGTTTCCGAAAACGTCATAAAATGACAACATAATATAGACCTACAA
AGACGCTTTCCATAACTGTCGTAAATTTGCATAACATACAAAGACGTTTCCCATAAAACGTCTTAGTATGCAATCTTGACATGCTATCTAAGACGGTCAT
AAAAACCGTCTTAAATTGGCACCTATTAAGACGGTCATGGTAACCGTCTTCATATCGCAAATTTATCTGTAGACTTTAAGACGGTTATGGAAGAAACGTT
GTAATATTTAGCACATACTAAGACGGTTCCCATAACCGTCGTAAAATAGCTTATACATTTTACGACGTTGGCATTAACGACGGTTGAAAACCGTCGTGAC
ATGGCCATAAGAACCGACTTAAAATCCAATTTTTCTAGTAGTGTAGGGATGATTGTTGTGTATCGAGTTTTGTTTTTGGTTATCATCAAGATTAAAGAGA
AGATGAAACCCGTTGTTGTATCACTATCGTGCATGTCAGCCTCTCCCAAGAGAACAATACAGGTCCTGGAAAACCCCAATGCCACTCCTTTACATTGAGA
TTTGAGAAGTTATATAATTTTCCTTTTAAAATGTAGTGAGTGTAGTTGGATAGGTGTGCATTAATTGAAGAGTGGATTTAAGAAGCGGGGAAACTATCAG
CTTCACATTTGTCAAGGTGAAAACATCAATAGCCGTTGCAGTGTCCTTGCTTTCTCAGCTTCTGATCATGAAGTTTTAATTGTAATAAACTATTAGGTAA
ACATTTTTTATTTCACCGGTGCAGTGACATTAATTGTATAAATTGTTATATATTTAGATTATGATCAATATATTGATAAGTTTTTGTTATCTGAA