Detailed information on CNT0000678 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000678

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQPWFNDGQTDLPGGRNCRHSTMIESIQIRF

>peptide 2 (30 aa)
MYKLIIIVIRPCQLRIGWEKPESRIPGPKL*

Sequence

>CNT0000678
CACAATTGATGTGAAGAAATTTCACAGCAGAACTTTCAACTTCCAAATGAATTTTTTGGTGGTTGTGAAAATAATGAATATATGACACATGTACAAGCTA
AATAAATAACCATTGTGTTAGGATGGCCCCTGTTAATTAGGCCTTGTAAGTTGAGAGTTGGCCGTATAATCTTAAATTAGGCTGTATAATAATGAATATA
TGACACATGTACAAGCTAATAATCATTGTAATTAGGCCTTGTCAGTTAAGAATTGGGTGGGAGAAACCAGAATCTAGAATTCCTGGGCCAAAGCTTTAAA
AAGTATAATGAGAATCTTAAACAAAAATAAAGATGGTAAAATGTAAAACAGGACAACAGCTGTCAAAAAGTCATATTATGCAATGAGCCACTAATGTTTC
TGAAAACATATTCATTATATTATTTTATTAGTTATTGCCACGTATGGCCAAAATTAGAAACATAGTTTAATAACATTAAAAAATTCCTTTTATGATATGA
TATTCTCACATGCAGCCTTGGTTTAATGATGGACAAACTGACCTGCCAGGAGGAAGAAATTGTAGGCACAGCACCATGATTGAGAGCATCCAGATAAGAT
TCAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G30780.1 Uncharacterized protein protein coding CNT0000678 820 312 CDS Cis