Detailed information on CNT0000681 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q38840|AGL17_ARATH, E-value = 6e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000681

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MENEEAKEPKRICQDKMRHPILLAWSEIDLIYTHLSVSNQLSRPKSQYSESSFKALGPG*

>peptide 2 (29 aa)
MQLQSGTEIKCLISCEIKKKNYRLDILSD*

>peptide 3 (35 aa)
MVDELQDPTQRSLIILGRSCCFVGWLGTNDNLPDY*

>peptide 4 (32 aa)
MIVYFCLSFIFWVRYYRNFKAIDRVCLLLCLF*

>peptide 5 (41 aa)
MNNRFLNIECVFMDHLPSFVALHFLFGSAPSSDRVQHFLDE*

Sequence

>CNT0000681
CCACGTTGCCGTTTTTATAGTACCTCATGCCCTTCCGCAAACCAAACCAAACTCTTGAGAAAACGCTGATTAGTGATTCTTCCTCTGAATGATTCAAAAT
GAAGAACCGTTGTTATGGTTAGTTGTGTGACCTAACATGGAGAACGAGGAAGCCAAAGAACCCAAACGGATCTGCCAAGATAAAATGCGACATCCTATCC
TTCTTGCATGGTCAGAAATAGATCTGATTTACACGCATTTATCCGTTTCCAACCAACTAAGTCGGCCAAAATCTCAATATAGTGAATCATCATTCAAAGC
ATTGGGACCCGGATAATCTCGTACCATAAATGCGTTGTACTGTTGAATGGAACTAATATGGTTGATGAACTACAAGATCCAACTCAAAGAAGCCTGATCA
TTCTAGGGAGAAGTTGTTGCTTTGTTGGCTGGCTTGGCACAAATGACAACCTCCCTGATTACTGAACAGTTTTGCTAATGCAGCTGCAATCTGGTACAGA
GATTAAGTGTTTAATTTCTTGTGAAATTAAAAAGAAAAATTATAGACTTGATATATTATCAGATTGAGTGAATACCCGAGTTTCATTGCTTTGGTTGATG
GTTCACTGTATTTGTATTGAGACTGTGGCTGACTTAGCTGGAGACTGATAGATGCAAGTGAATCATATCCATTTCTGACGTTGTAAGAAGGATTGGATGC
CACATTTTCTTCATTTGTACTCCTTGCTTCATAAACCTAAGATTGATCCAAATCTTTTGTTTAGGTTTAGCTAAAGGAAACTTGAAGCCTTTAGCTTCGG
ACTAAATAGAAGGTTTAGTTACTTTTTTGCTCTTCTAATTTATTTTTGGAAAAAATATGTTTTTAGTCCCTATACTTTGTAAAATTATTAATTTTAGTCC
TTGTTCTTCACCATCTAACATTTTAGTCCCTCAACTTTTATAAACCAGTGTTTTTAGTCCCTTAGGACAGACGTCATGTAGGAAACATTGTCAACAGTGT
TTGTCCCTGAACATTTTGGTTCATGAATGTTTAAAGCAAGGGTTTTTAGGCCCTCAAGACAGACATGATTAACATTGTTTCCTACTTGGCATTTGTCCTG
AGGAACTAAAAGCATTGATTTTTAAAAGTTCAGGGGCAAAAAGTGATCAATAGTGAAGTAGAGGGATTAAAATCAAGAATTTTATAAAATACAGGGACTA
AAATCATATTTTTCTTTTAATTTTTAGGTTCAATTTGATCATCTTATTATATTTAAAGGTTCAATTAGGTCATCTATTTTTTAAAAATAGTTCAGTTAGT
TTTTTTATTTTTAAAATAGGTCCCATTTTTCTTCTATATGCTCCAAAATTTTTGAAAAATAGGACCAAAATTGGTTCTATATGGAACCAAATTGAATCCA
TTATAAAAAAAAGACCTAATTGAACTATTTTCTTAAAAAATCACATGGCCTAATTGAACCTTTTAATAGTAAGAGGTCTAAATTAAACTTAAAAATTAAA
TTAGAGGATACATAGTTATTTTTGTCTCTGAATGTATATAATGCTGACAAATTCATCCCTGAAAGATGAAAATTCAAATTTTTGTTTTTGAAAGTGAAAT
AAGTGCGGTAAATTCATCCATTTGTTAACTTTTGTTTGTTACCGTTAATGAAAGAGTCTATGTGACACATTCAGGGATGAATTTGTTTGTGTTCTACACA
TTCAGGGATGAAAATGACTATTTACTCAAAATATAATTTAATATTCATTTTTTCTCCTTTTTTAATCGTTGCAAGAATAACATTATAATTAACACTTAAA
AAAATAGGAAAGCAAACATAAGTTAAAACAAACATAATAATAAGCATAATCTATCTGTTGTTCTGAAATTTCTATTGTGACAAAATTAGGTGAAGACAAA
ATCAAGTTGGGTTTCATTTTTTTGTTAGGATTAATTTAATGATTGTGTATTTTTGTTTGAGTTTTATATTTTGGGTAAGGTACTATAGAAATTTCAAAGC
AATAGACAGAGTATGTTTATTATTATGTTTGTTCTGACTTATACTTGCTTTCCTATTTTTTAAGTGATTATTGTAATGTTATGCTTTCAATAATTAAAAA
AGGGAAAGATGAAGATTAAATTATATTTTGGATAAATAGTTATTTTTGTGTCGGGATGTGTAGAGCACTAACAAAATTCGTTCTTGAATCACGTAGACTC
TTTCATCAATGGTAATGGATGAAAGCTAACGGATGAATGAATTTGTCTCATTTTTTTCACTTTTGATGACTAAAATTTGAATTTTAATCTTTCGGGAACG
AATTTGTCCGTGTCCTAGACAAAATGACTATTTATCCTTAAATTAAAAGACCACAAAAGTAATGAAATCAAAATAGAATTAAGCCAAATAAATGAGTTAA
GTCTGTTTGATATTGTCCTATCCATATGAAGTGCCTGTGTATGCGCAGGCTTGTTCATTTTACAAGCCTTTGTTAGGCTTAGGCATGGATATGTATTAAT
GGAAAGATGAATAATAGATTCTTGAATATAGAATGTGTTTTTATGGATCATTTACCTTCTTTTGTAGCTCTGCATTTTCTTTTTGGATCTGCTCCATCTT
CTGATAGAGTTCAACATTTTCTTGATGAATGATATTTCCCTATGATAGCATTAATCAAAATTGGTCAAATTTTTTGGGAAAATCTTAGTCAATCTCAGCA
AGAAGAAAACCATACTCCTTAAACCTTTTGGCGTAGTTCTTTAATCTCATTAGTTAAAATTTGATCCTGCAGGGAAATAGATGATAATGTAGGTTATGAA
TATGCAGAATCTTAAAGGGCAGAGATATAATTTGAACTGACCCATCATACCTTTTTCATGCGGACACCCTTTAAACTCATCTCCAGTTGGTTTTCCAGAT
TTTGTAGTTCTTTAATACCCAA

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G06981.1 Uncharacterized protein protein coding CNT0000681 117 172 CDS Trans
GLYMA13G32810.1 Uncharacterized protein protein coding CNT0000681 1640 617 CDS Cis
GLYMA13G32810.1 Uncharacterized protein protein coding CNT0000681 1821 676 CDS_UTR Cis
GLYMA13G32810.2 Uncharacterized protein protein coding CNT0000681 1640 617 CDS Cis
GLYMA13G32810.2 Uncharacterized protein protein coding CNT0000681 1821 676 CDS_UTR Cis
GLYMA13G32810.3 Uncharacterized protein protein coding CNT0000681 1640 617 CDS Cis
GLYMA13G32810.3 Uncharacterized protein protein coding CNT0000681 1821 676 CDS_UTR Cis
GLYMA13G32810.4 Uncharacterized protein protein coding CNT0000681 1640 617 CDS Cis
GLYMA13G32810.4 Uncharacterized protein protein coding CNT0000681 1821 676 CDS_UTR Cis
GLYMA13G32810.5 Uncharacterized protein protein coding CNT0000681 1821 676 CDS_UTR Cis
GLYMA13G32810.5 Uncharacterized protein protein coding CNT0000681 1640 617 CDS Cis
GLYMA15G06491.1 Uncharacterized protein protein coding CNT0000681 1172 579 CDS Trans
GLYMA15G06491.1 Uncharacterized protein protein coding CNT0000681 1005 519 CDS_UTR Trans
GLYMA15G06491.2 Uncharacterized protein protein coding CNT0000681 1172 579 CDS Trans
GLYMA15G06491.2 Uncharacterized protein protein coding CNT0000681 1005 519 CDS_UTR Trans
GLYMA15G06491.3 Uncharacterized protein protein coding CNT0000681 716 378 CDS_UTR Trans