Detailed information on CNT0000689 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SR66|DML2_ARATH, E-value = 3e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000689

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVSKYLVQMIQVPFSGKLPRVAVRHGICSYLS*

>peptide 2 (30 aa)
MLLDEMKTINKLIHQQFTLLSRFQNILFAC*

>peptide 3 (37 aa)
MQFKVRKARSQYSVIHRRVWTLDDREFSKIYEKVNTH*

Sequence

>CNT0000689
ACCAGTGTTAGTATATAAGTTATATTAGCATGTACATTGCACTAGTATATTAGTGATAAATGATAATAATAAAAAACCAGCAAGGAAGCTAGAGCTAAAA
AATTGTTTAGTACAACGATGCAGCTCGTAATTTGTATTCCAAAGTACTATTTCGTATTTATATAGAAGTGTTCACGATGCAGTTTAAGGTCAGAAAAGCA
AGGAGCCAATATAGTGTCATACACAGAAGGGTATGGACATTAGATGACCGAGAGTTTTCAAAAATCTATGAAAAGGTAAACACACATTGAAAGTATTCGA
ATACCTCCGAGTATGCATGCTAGAGTGCGCATGAATCTTCCACTAGGAGAAGATAATATGGATCATAGAAGCCTGACAATGAAAATATGAAATGACTGAC
AAAGTAAGGAAACAAGGTTTCTAGAATTATTCGATGAAGTGGGTATAGAATGGACAGCGATGGCACAAGGGAATTGCTATTAAGGGTTTCAGTTACAGTT
TGAGGAGTTTTGATACCAGAAGTACATTGGTAAATAGTGCAAGTTGTCAATTAGATTTCATTAGTCACAAAATGCTCCTGGATGAGATGAAGACAATAAA
CAAGTTGATACACCAACAATTTACTCTACTAAGTAGGTTCCAAAATATACTGTTCGCCTGTTGAGGTTCCAGATCCAACTTCGAGGCACACTAATTGGGT
TGAGACTTGAGTCATGGTCAGCAAATACCTGGTTCAAATGATACAGGTGCCATTCAGTGGAAAGCTCCCCCGTGTAGCTGTTCGACATGGTATCTGCTCA
TATTTATCATAAATTCAAGTCAGTCTATTATAATGCTTGAATTTCTATGGAGATGTATTCCCTCCCCTGTTCCCATAATGTATAAGAATTAGTAAGCTAC
ATATGGTTAAAACAATGATTTTGATAAGCATTCAGACCAGGAGTGTCCCTCTAACTATCTGAGAATTTGCTTCACGGAAACTGTTGCACGAGAAACATTC
ATTCTCATTACAGAGTTGGCCACATTCTTCTTGAGAGCTGCATTTGCTTTCTGGTGGCTGTATAGAATTTGCTGTCTCACCTAATGCAATAATT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G07601.1 Uncharacterized protein protein coding CNT0000689 895 350 CDS Trans
GLYMA10G07601.1 Uncharacterized protein protein coding CNT0000689 316 114 CDS Trans
GLYMA13G21460.2 Uncharacterized protein protein coding CNT0000689 972 350 CDS Cis
GLYMA13G21460.2 Uncharacterized protein protein coding CNT0000689 328 114 CDS Cis