Detailed information on CNT0000690 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000690

Peptides detected in this lncRNA

>peptide 1 (94 aa)
LPNFHSQWLSEFKVISILRSLKLHGIFKCIPNQSQHTKLLVYITGNNFYFHSYYTCACILTNFKLLTFPSKQTYSKMVNFSGFFQYQILILLFR*

Sequence

>CNT0000690
CTCCCAAATTTCCATAGCCAGTGGTTGTCTGAGTTCAAGGTGATCAGTATTCTGAGAAGTCTCAAACTTCATGGAATTTTCAAGTGTATACCTAATCAGT
CACAACACACCAAATTGTTAGTGTATATCACGGGTAACAATTTTTATTTTCACTCTTATTATACATGTGCTTGTATTTTAACAAATTTTAAGCTCTTAAC
ATTTCCATCAAAGCAAACCTACTCCAAGATGGTAAATTTTAGTGGTTTCTTCCAATATCAAATTCTCATATTATTATTTAGGTGAAAAAACCTTTTTTTT
TTAATTCTTTCTTCAGTATAGTTTTTAATTTTACACAAATTCCATCATTTTAGTGGCAATAGTAGCTTCATTTCTCCACATAACCATCATGGTTCCAATA
ATTCCTTATGCATCATAATGTTGATGAGCACTTTTAAGGCAGAAAAGTAACTTGAAAAGAACCTTCTGGGACTACGTGGCAAATCGCGAGCAAGTCCATA
AAGAGTATCAGAGTCCAAAAACCCACCATTTCCATGGGGAATGGCTTTAACATACTTGCAGTTTCCAGCGGTTGGGAATATTGGATCTGATTGATTCATT
GGAAAAAAATCACCTAGACCAACTGGGATATCGTCACGACCCATCATGTGCAATAAGTCATAGATAACATCTATTGTTGCGGCATTTGCCC

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G38300.2 Uncharacterized protein protein coding CNT0000690 474 293 CDS Trans
GLYMA13G28400.2 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28400.3 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28400.4 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28400.5 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28400.6 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28400.7 Uncharacterized protein protein coding CNT0000690 1868 691 CDS Cis
GLYMA13G28410.1 Uncharacterized protein protein coding CNT0000690 586 308 CDS Trans