Detailed information on CNT0000691 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0011552, E-value = 3e-06 (S. tuberosum)

Expression of CNT0000691

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIHSEKTQKGEGNKGKINMCCSICFGSLTSN*

>peptide 2 (46 aa)
MNTTATHTLIGNIVSTPSATHQNSLMFKYVTENDKDSERGLMKIVK*

>peptide 3 (90 aa)
MKTQNITKFQSLNGKEMLKMVHNITIPQVMPYMQCQLHKIKLCGLYNTWRRTKYYYVLIAFFFLREILISFKTHTYGLSNKKKEHTLHTF*

>peptide 4 (38 aa)
HTCSIIERYPPTFGRMVPSGSIPPSPPIPTAMSSLPIM*

Sequence

>CNT0000691
ACATACTTGTTCTATAATTGAAAGATATCCACCCACATTTGGGAGAATGGTACCGTCTGGGAGTATTCCACCCTCACCTCCCATTCCAACTGCTATGTCA
TCTCTCCCCATCATGTAAAGTATGTCATAAACTTGATTCACAGCATGTCCGACATTAGTCCAAGCATTTGCATTGATTGTGACTCCCTACAGATGTTGGT
ATGAAGACTCAAAACATCACAAAATTCCAATCCCTGAATGGTAAAGAAATGCTTAAAATGGTTCACAACATAACCATCCCCCAAGTAATGCCATATATGC
AATGTCAGCTTCATAAGATCAAATTGTGTGGGCTTTACAACACATGGAGACGAACAAAGTACTACTACGTATTGATAGCCTTTTTTTTTCTGAGAGAAAT
ATTGATATCTTTTAAAACACACACTTATGGCTTATCCAACAAAAAGAAAGAACACACACTACACACTTTTTAATATGACAATTCCTTTATTAAGCCAACA
GAAACAACAATAAGTTTTGCTTGGAAAATAGAAATGATTTCAACCAAGGAGTAAATGATTCAAGCCAATCAGTAAATGCTATGATTCACAGTGAAAAAAC
TCAAAAAGGAGAAGGAAATAAAGGCAAGATTAACATGTGTTGCTCAATTTGCTTTGGTTCGCTAACCTCCAATTGAAACTCTGATCTGTTGAGCTTCAAA
AGGTAGAGAAGAGCAAATACATCATCAAGATCAACATCCGTATCCAAAAGAATTCGACGAGGCTTGGCCGCCACAGTAGTTACTAACATAATGAATACCA
CAGCTACCCATACCCTCATTGGAAACATTGTCTCCACTCCAAGTGCAACCCACCAGAATTCTCTTATGTTCAAATACGTAACAGAGAATGACAAAGATTC
AGAAAGAGGTTTGATGAAAATAGTAAAGTAAGAGTCATGAAAAGCATGCAAAGGAGAGAATTCATGTATTGTGTGGAGGAAGTGAAAGGCACGTAAAAAA
ATTATAAGGAGGTAGAACTAGAACTAGAACTAGAACTAGAAGTACCTTACTGGCTTGTTAGAAAGTAAAAATGAGAAGCAATTTAATTTACGTGTTCATT
GGTTTCGTAGTGCATAGAAGGATGAAG

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G28400.2 Uncharacterized protein protein coding CNT0000691 3082 1127 CDS_UTR Cis
GLYMA13G28400.3 Uncharacterized protein protein coding CNT0000691 3040 1112 CDS_UTR Cis
GLYMA13G28400.4 Uncharacterized protein protein coding CNT0000691 3082 1127 CDS_UTR Cis
GLYMA13G28400.5 Uncharacterized protein protein coding CNT0000691 1324 483 CDS_UTR Cis
GLYMA13G28400.6 Uncharacterized protein protein coding CNT0000691 3040 1112 CDS_UTR Cis
GLYMA13G28400.7 Uncharacterized protein protein coding CNT0000691 3082 1127 CDS_UTR Cis
GLYMA13G28410.1 Uncharacterized protein protein coding CNT0000691 280 127 CDS Trans
GLYMA13G28410.1 Uncharacterized protein protein coding CNT0000691 628 364 CDS Trans