Detailed information on CNT0000706 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7XSK0|BGL18_ORYSJ, E-value = 8e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000706

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5540.4450000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.6

Peptides detected in this lncRNA

>peptide 1 (32 aa)
YFTSKQQIVYNLVVEHYPTWIDVPVYPSCYSS*

Sequence

>CNT0000706
CTACTTTACCTCTAAGCAGCAGATTGTCTATAATCTTGTTGTAGAACATTATCCCACTTGGATTGATGTTCCCGTATATCCCTCCTGTTACAGCTCATGA
AGATCAAATTAAGCAGAAATTTTGAAAGATAAGATTATGGGAAACTAATATGTAAACTTTAAATACTTGGTAGAATCCTCGTCCATGAGATAGAGAATCG
ATATACATTTACCCCAAGAGACGACATCAACTCAATGTCTTCCTGTCGAATGTCAAGGATAGTGGTTA

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G35125.1 Uncharacterized protein protein coding CNT0000706 391 248 CDS Trans
GLYMA12G35140.2 Uncharacterized protein protein coding CNT0000706 344 270 CDS Trans
GLYMA13G35410.2 Uncharacterized protein protein coding CNT0000706 730 268 CDS Cis
GLYMA13G35410.3 Uncharacterized protein protein coding CNT0000706 730 268 CDS Cis
GLYMA13G35410.4 Uncharacterized protein protein coding CNT0000706 730 268 CDS Cis
GLYMA13G35430.2 Uncharacterized protein protein coding CNT0000706 341 267 UTR3 Trans
GLYMA13G35430.2 Uncharacterized protein protein coding CNT0000706 518 258 CDS Trans