Detailed information on CNT0000728 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000728

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LFNNNSLILLDEVSYMNHTTLFRSVIGVVTILI*

>peptide 2 (44 aa)
MTIWNVFQIRRGQFLRSLPHLLLLGYAGQKTLNIHLIVFCLFLT*

>peptide 3 (70 aa)
MEEEDDYLERVPDSSWTVPQIPSPPTASGLCWPKDPQYSSDSVLFVPDISFSLIQQSQISSICLRRWRQL*

>peptide 4 (35 aa)
MHHLLDYNSDMIQYWIVCVKSFVPSQLFILSNSMPT

>peptide 5 (51 aa)
MIISSLMLQWKFHLISYIFYSWLSQFLLGSNQTLYMSLEIFLAKQQQIMGV*

Sequence

>CNT0000728
TCTTATTCAACAACAACAGCCTTATCTTATTAGATGAGGTTAGCTACATGAACCACACAACGTTGTTCCGCTCGGTTATTGGCGTTGTGACTATTCTTAT
TTAATTGATTATTTTTACATTTCTTGTGTGTTTGTTTGCTCACCATCTACAGATAAATAGGCAAATTACTATAGGCCGATGGTGGTAAGCTTGGGGATTC
TGATTCTCCTGTTTTAAAGTCTGGTGAAGAGGATATGGAGGAGGAGGATGACTATTTGGAACGTGTTCCAGATTCGTCGTGGACAGTTCCTCAGATCCCT
TCCCCACCTACTGCTTCTGGGTTATGCTGGCCAAAAGACCCTCAATATTCATCTGATAGTGTTCTGTTTGTTCCTGACATAAGCTTCTCTCTCATTCAAC
AATCTCAGATTAGTAGTATTTGTTTGAGACGCTGGAGGCAGCTTTAATTTGTTTACTCTTTGCTAATAACTTAGAGGCATTGATTATTCCTTTTATTTTT
GGTATGATTATAAGTTCTCTCATGTTGCAGTGGAAGTTTCATTTGATTAGTTACATTTTCTATTCTTGGCTGTCTCAGTTTCTTCTAGGGAGTAATCAAA
CTCTCTACATGTCATTGGAAATTTTCCTAGCAAAGCAGCAACAAATAATGGGAGTTTAGAAGGCTTTTACTATTAAGTTTGGTTTTGTAACATTATCATT
TCCGCTCTAGGATCCTATGTAGATGCATCATCTATTGGATTATAATAGTGATATGATTCAATATTGGATTGTTTGTGTCAAGAGTTTTGTTCCTTCACAA
TTATTTATCCTGTCTAATTCTATGCCAACTTG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G28480.2 Uncharacterized protein protein coding CNT0000728 105 79 CDS_UTR Trans
GLYMA16G01410.2 Uncharacterized protein protein coding CNT0000728 95 65 UTR3 Trans
GLYMA16G01410.3 Uncharacterized protein protein coding CNT0000728 95 65 UTR3 Trans