Detailed information on CNT0000781 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O49561|G2OX8_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000781

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MAISETTRPSIASEKREDKRMQPQLQHIRNQFLTCSREVQSGINVRALRV*

>peptide 2 (61 aa)
ADLYWSLFMKVAKKKEKIGDASCTSEFHAGPSLRCLSDRNERLLTMTAVSDWLFRSSCEIP*

Sequence

>CNT0000781
GCGCTGATTTATATTGGAGTCTCTTCATGAAAGTTGCCAAAAAGAAAGAAAAAATTGGAGATGCATCATGTACCTCAGAGTTTCATGCTGGTCCATCCTT
GAGATGTCTGTCAGATAGAAATGAAAGGCTTCTGACCATGACAGCTGTCTCAGATTGGCTCTTCAGAAGCTCATGTGAAATTCCATGATTAACAACTTGA
AAGAAACCCCATTCTCTTGCAGCTTCTGCAATTTCCCTCATGCATTCTTCTCTCTCAAGACTTAACCGGCCAAGGTCGATCAAAGAAACTTTGGAATAGC
GCTATACAATTAAGTATATGGCTATATCAGAGACCACGCGGCCAAGCATAGCATCAGAAAAAAGAGAGGATAAACGCATGCAACCACAACTGCAACATAT
ACGAAATCAGTTCTTGACTTGTAGCCGCGAAGTACAAAGTGGAATAAACGTACGTGCGTTGAGAGTGTAAGCGCAACCAATCAAATTTTACATTGTTACT
CTGATTTTAAATTACGATTGCGTTCAGTAAAAAAAAATAAAAATTAACTACATGCAATTGTAATAAATTGAAATACTTTTATATTGTGGTCGCAATTACG
ATTGTGAACTACAATTTAAAATTATAATTATTTTTGTATTATTGTTATTTTTATTTTCATATATCGACATGTATCCTCTTAGGCAGTCCAAATTAAGCAC
AGCCCAACACTAAATGTATGC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G36390.1 Uncharacterized protein protein coding CNT0000781 352 124 CDS Cis