Detailed information on CNT0000793 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000793

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2830.4540.46403.5082.3733.4491.49301.10800.263000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHTTLTAVGIILTTTKSVPNFITKISSIS*

Sequence

>CNT0000793
GCAATGAAAAAGACACAATGGTAGCTAGATGATGAATGCATACCACACTTACTGCAGTGGGAATAATTCTCACGACCACCAAGTCTGTTCCAAATTTCAT
CACCAAAATTAGTAGCATCTCATAAACTTGTATAACTTAGGCCATAATGTAAGGTTTATTAAAACAAACCGTCAACGCACCTACAAATCCCACAATCATC
ACAATGAAACTGTTTTTTCCCGGTCTGCTTAATGTGTAACCAATGCTCAGCATCAAATAGAAAACAATAAGATTAACAATCACAAGCTAGAAGCAAACAC
CAACTGTCAACTCTCAAACAAGTCCATCTCCAAGAAATATGAAGAACCCAAAGTAATAGTAATATAAGCATATTAATGAAGCAAAATTTAATCATATACT
GCAGATTCATTGAGTGACCCCTTACATCATCATCGAAGAATTTGCAGATATTGCAGAAATATTCTCCCATTCTGACACCACAATTTGTGCAAACTTGAGC
AACCTTCAAAAGAAACAAATAAAAG

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G38070.1 Uncharacterized protein protein coding CNT0000793 103 71 CDS Trans
GLYMA13G28700.1 Uncharacterized protein protein coding CNT0000793 1420 525 CDS Cis
GLYMA15G10400.1 Uncharacterized protein protein coding CNT0000793 1128 521 CDS Trans
GLYMA15G10400.2 Uncharacterized protein protein coding CNT0000793 1128 521 CDS Trans
GLYMA17G02630.1 Uncharacterized protein protein coding CNT0000793 95 71 CDS Trans
GLYMA17G02630.2 Uncharacterized protein protein coding CNT0000793 95 71 CDS Trans
GLYMA17G02630.3 Uncharacterized protein protein coding CNT0000793 95 71 CDS Trans