Detailed information on CNT0000795 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000795

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MQVVMIEHQLIYWIKVILNHTKYNRIFCPIVIDSTPTEMNSQHKLLENNTHISLYSPITHI*

>peptide 2 (48 aa)
MGEKMSCFWSHELRSEKDYGTVDVARIPYCEKLILRQGREAGRDGKEK*

>peptide 3 (68 aa)
MSNAGGDDRTPIDILDKSNTKSHKIQQNFLSYSHRLNSYRDEFSAQITRKQYTHIPLFPYYAYLIICNC

>peptide 4 (33 aa)
KILNTPTPSTHRHRCCWVIFNVILLLLLMMIKL*

Sequence

>CNT0000795
AAAAAATCTTGAATACACCAACGCCGTCCACTCATCGGCATCGTTGTTGTTGGGTGATATTTAATGTTATTTTGTTGTTGTTGTTGATGATGATAAAACT
CTAGAGAGCAATTGAGGCCCAACTAGAGACCAAACCCACTCATGTGCTACCAAATGTAAGTTAGAGAGATGGGGGAGAAAATGAGTTGTTTTTGGAGTCA
TGAGCTAAGGAGTGAGAAAGATTATGGAACTGTTGATGTTGCTCGCATCCCTTATTGTGAAAAGCTTATTTTGAGACAAGGAAGGGAGGCTGGAAGAGAT
GGAAAAGAAAAATAGAATATTGAGAAGAATGGGTAGTTTTGAGTGGGACAGGTGTGAGGATCCAACAGCAAGGTATGCAACTTGACTACTTGAGTCTCAC
ATTGGATGTTTAGGATTTAATGTGGAGTTTATAAGGTCTTAGACTCTCAGTCTCTCCAACTACAACAGCTAGCTTTCGTGGTGTAGTTCTCCCAAGGTTC
TTATCAATTGATATCATAGCTTTTTACCATGGCTCTCAACTGTAAATGAGCAATGCAGGTGGTGATGATAGAACACCAATTGATATATTGGATAAAAGTA
ATACTAAATCACACAAAATACAACAGAATTTTCTGTCCTATAGTCATAGACTCAACTCCTACAGAGATGAATTCTCAGCACAAATTACTAGAAAACAATA
CACACATATCCCTCTATTCCCCTATTACGCATATTTAATAATATGTAACTGCT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G39010.2 Uncharacterized protein protein coding CNT0000795 88 51 UTR5 Trans