Detailed information on CNT0000798 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FIT9|HS217_ARATH, E-value = 1e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000798

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1281.3971.42701.8451.391.9953.7410.7580.60600.362.17700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MKNWLSYLVFLLLIHSLHLSDTNPQCFGWNSLNEITTHLTQTPIEGRHQKDQRT

Sequence

>CNT0000798
CTTTGAGTCTCTTTGCTGCTTCCACTGTCCACTAATTTCCACAACCTTCCCTTTATCAACATGGACTTGAATGTTATTTTTACCAGTTCCTGTTTTGACA
AACCACTGGTGTCACAGAAATTTTGGCTAGTTAAGTGCTTTTCTTAATTGAATATAAGGAAACTTGGCCCCATCAACTCCAACCAGATCAAGTTCATTTA
TTTGTTTTTTTTATTAAAAGATCCACCATACAATAGGTTGTGCGTTTAACAGGCATGTACTATTAGTGCATAAGATTTTATACCGTCAACTAATCAGAAA
TCATTATTTTTGGTATGACTTTTAAAGTAGTTATTATAAAATTTAACAAACTTATCATGATGGTTTCTTATTAGATGACAGTCTGCATATATTATTTATT
CATAGGTTATTATTACCTGTTGTTACTATAACCTGGTAAAGAAAAATTTCGATGCAAGATAAAAGCTCTCCTTAGGTGCCTGAAAGTATAAGCAATAGCT
CCTTCAATTCTGAGATCCTTTTTTTTTTCAGGTCTTCAATATGATGGGGCAGTTTCATTGTATCATAATTTGCTTACCATAGATTCAGCTTACAAGTAAG
AGTAAAATGAAAAACTGGTTGTCTTACCTGGTATTTCTGCTTTTAATACATAGCCTTCACCTGTCTGACACCAATCCACAGTGTTTTGGCTGGAACTCCT
TAAATGAGATAACAACACATCTGACTCAAACTCCCATAGAGGGAAGGCATCAGAAGGATCAAAGAACT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G34340.1 Uncharacterized protein protein coding CNT0000798 704 339 CDS Trans
GLYMA12G34340.1 Uncharacterized protein protein coding CNT0000798 769 370 CDS Trans
GLYMA13G36220.1 Uncharacterized protein protein coding CNT0000798 1062 391 CDS Cis
GLYMA13G36220.1 Uncharacterized protein protein coding CNT0000798 904 339 CDS Cis