Detailed information on CNT0000800 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0010879, E-value = 1e-14 (S. tuberosum)

Expression of CNT0000800

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.2861.4111.5860.7690.5030.4211.8130.6180.5170.1380.5990.655000.39leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKQTSFITVLCSYTFYREMLTTDFLAYDLEYILLLC*

Sequence

>CNT0000800
AGTGAGTTTAGGGGCACTGACCTGATCAACAGCAACCACTGAACCAGTGCCTTTGTACCAGTAGGATTCCTTCCTAAGAATCTTCACCTGTTGATTGCAA
AGAAAAATTAGAAACTAACCCTGTTGATAAACAGCTAGCTCAAATGAATGAAACAGACAAGTTTCATCACTGTCCTTTGTTCTTACACATTCTATAGAGA
AATGCTAACAACAGACTTTCTAGCATATGATCTTGAATATATTCTTCTTTTATGCTGAAATTCATTAAAAATCATAAAAATTGTACAGGTCTCACTTATT
ATTCAATAAGTTTGACATAAGATTTTGTAATTTCTATTCATTTTTAACTAACAAGTAATAGAAAGAGTGTTAGAAGAAGTATGTTAGTATAACTCACTCC
TCTATTCTGAATTCTCCCTCTTAAGCTTAAATTTGAACCAGAAATCAATAACGCAGCTACTTATACCCAGGACTCAAACTTCAGATCACTAGTCAAGCTA
AAACAATTGTTTATAGTTTGAAAAAAAGTTTTAGTGTTTAGTTTGAGAAAATCCAATTTCACTATTTACTATATAAATCTTTGATGACACAAAAGAATAG
GAAAATAAGAGGACATGTTTATAACTAGACATTTTCTCATACCAATTCTAATAGGGAGCTAGCCTAGTATATTCACAGACAAGCAACAACTATTAAGGAT
CATGTTCATGGGATAAAAGTGAATTATTCTGCACAACATGAGCAACAACCACTTCTAAAAAGTTGAGTTTTGAAGTAACTCACCTTAGCACCTCTCTTGG
GGCCAATAGGTGGTGGTTTTGGCTTTGCTTCAGCTTCAGCTGGAG

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G04780.1 Uncharacterized protein protein coding CNT0000800 364 143 CDS Trans
GLYMA10G04780.1 Uncharacterized protein protein coding CNT0000800 449 277 CDS Trans
GLYMA10G04790.1 Uncharacterized protein protein coding CNT0000800 191 122 CDS Trans
GLYMA10G04790.1 Uncharacterized protein protein coding CNT0000800 297 126 CDS Trans
GLYMA13G19170.1 Uncharacterized protein protein coding CNT0000800 848 312 CDS Cis
GLYMA13G19170.1 Uncharacterized protein protein coding CNT0000800 898 337 CDS Cis
GLYMA13G19190.1 Uncharacterized protein protein coding CNT0000800 344 126 CDS Trans
GLYMA13G19190.1 Uncharacterized protein protein coding CNT0000800 306 120 CDS Trans
GLYMA13G19190.2 Uncharacterized protein protein coding CNT0000800 306 120 CDS Trans
GLYMA13G19190.2 Uncharacterized protein protein coding CNT0000800 344 126 CDS Trans