Detailed information on CNT0000812 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9STN5|Y4833_ARATH, E-value = 6e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000812

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7281.8132.2882.9061.6474.1381.7443.5042.6032.1863.1712.4742.2433.2812.948leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (38 aa)
PPPPHRVTDGFKNKSQFTVSHSNNNNKLTIRIRNRTIE*

>peptide 2 (33 aa)
MIRRSNETVTLTELTPALLREMSVTAVALVVMS*

>peptide 3 (95 aa)
MDDSAFKRDGHFNRTYSCSSQRDVRYSCGTCGYELNLSSSNRNTASIGSKYGKSIKRDGAESSPSSKVVSHTKYDIRIRALQPSSSEESGIPVYA*

>peptide 4 (36 aa)
MTGWLELRSSLIYADGLASFCAFPNENVTNNRVKEL*

>peptide 5 (31 aa)
MNCMISVVRRMLLNIRFTFSDIDLMDKKYWLV

Sequence

>CNT0000812
CCCCCCCCCCCCCACACCGAGTCACCGACGGATTTAAAAACAAAAGCCAATTCACAGTTTCCCACAGCAATAATAACAACAAATTAACAATCAGAATTCG
AAACAGAACCATCGAATAATAAAAAAGGAAAACTAAAATTCCAAAAACGCCACTTTCATTCAGCTAAGCTTCGTCTCCACCATCATCATCATCTTCTTTT
TCTTCTCTACCTTTGGATCCTTCCTTTCACTTTGGCGTGACCGAACCATTCCACTCCCTCGCAAAACGGTGTCGTGTCGATCGCGTTCGGTTCGGTCAAA
CTCGCGCGTCCCGAATCCTCCGGAACACGCTCTGTCCCAATTCCCTATAATTCACTTCTCTCTCTCTCGCTTAACCTCTCCTCCACGGTGGCTCTTCCGC
ATTCTGCCACCGCCTCCGCCGTCGCCGATAATCACTAATCAATAGATGGATGATTCGGCGTTCAAACGAGACGGTCACTTTAACCGAACTTACTCCTGCT
CTTCTCAGAGAGATGTCCGTTACAGCTGTGGCACTTGTGGTTATGAGCTGAACCTGTCCTCCTCGAACCGGAACACTGCATCCATTGGATCTAAATATGG
GAAGTCCATAAAGCGAGACGGAGCTGAATCATCTCCTAGCTCCAAAGTGGTCAGTCATACAAAATACGACATTCGCATTCGTGCCCTACAACCTTCATCT
TCTGAAGAATCTGGAATCCCTGTGTATGCTTGAAATACCTGGTAAAAATAGTACTTCCTACACCGCCAAATCTGATGACAGGGTGGTTAGAACTTAGAAG
TTCATTAATATATGCAGATGGTTTGGCAAGTTTTTGTGCTTTCCCTAATGAAAATGTGACTAATAATCGTGTGAAAGAGTTGTAAGAATTAAATTAAAAA
GTATTGAAGGTATGGGATTTTATGAAGTTGACTAAACCGTCAAAACTTCCGAGGTAAAATATTATATTACTGGGAAGAAAAACAGAACCTAAGTGGAAAA
GAAAAAAGGAAAATATTTTTAAATGAATTGTATGATTAGTGTGGTACGAAGGATGCTTCTTAACATCAGATTCACATTTAGTGACATTGACTTAATGGAC
AAGAAATATTGGTTAGTC