Detailed information on CNT0000846 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007800, E-value = 5e-20 (S. tuberosum)

Expression of CNT0000846

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.9566.9757.39111.9685.6794.0493.7722.6889.30210.21313.44112.8849.7039.7159.105leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MGPKDHKFEPTSRLGLLNFVDFKCFLLLKPIMLCVGPF*

>peptide 2 (65 aa)
MTLVSGFLAVISVNVVIAFYIYLALREPTADKPEPDPKFLAEAKASINQSTGDAQQPSQALKKEQ*

>peptide 3 (35 aa)
MCWAFLVIRGIFISVSIIGFYDTSRNFLINENLSC*

>peptide 4 (69 aa)
MLNNLPRLSRKNSRCDAGLQKGEDLNLGGIVTRSRLKKLQEDINMKMISLVEKDDGWDLKIINLNLLLD*

Sequence

>CNT0000846
AAAAAAAATAAAAAATAAAAAAACCTCAGTCCAGGACGGTGCGTTTTGCTGACTCTTCTTCTCCTTCCCCCAATCCCCAATCCCTCTTTCTTCGTTTCAG
TTCAATCTCTCTCTCTCTCTCTCTCTTCCCAATTCGCAAGTTTCACTGCACAATCACACTGCATATACCTATTCATTTAGCCACGAACTTCACATTGGGG
TGGTTGCAGCGACAAGTTTCTCACACCAGAGAGGGCACACGATTTGGACTAAGAGTGTGGAGCATCCAATTTGTCCCCTTACTCTATGACACTAGTGAGT
GGATTTCTTGCTGTCATATCTGTCAATGTGGTGATAGCATTTTACATATATTTGGCATTGAGAGAACCTACGGCGGATAAACCCGAGCCTGATCCTAAAT
TTCTTGCTGAGGCCAAAGCTAGCATCAATCAGTCTACAGGGGATGCTCAACAACCTTCCCAGGCTCTCAAGAAAGAACAGTAGATGTGATGCAGGACTAC
AAAAGGGGGAGGACCTTAACTTGGGAGGAATTGTTACTAGATCAAGGTTAAAGAAGCTACAAGAGGATATTAATATGAAGATGATTTCACTTGTGGAGAA
GGATGATGGATGGGACCTAAAGATCATAAATTTGAACCTACTTCTAGATTAGGATTGCTTAATTTTGTGGACTTTAAGTGTTTTCTTTTATTAAAGCCTA
TTATGTTATGTGTTGGGCCTTTTTAGTTATACGGGGCATTTTCATTAGTGTTAGTATAATAGGCTTTTATGACACGAGTAGGAATTTTTTGATTAATGAA
AATTTATCTTGTTAATTAAGAGTGCTTCTCTTTGGTTCTTTCTTGGAATCCTTTCATTCTAATCAAGGAAATTCATTCCTTTTGGCGAATTTACCTTAAC
TCATCAATTCATCTGAAACTGAT