Detailed information on CNT0000875 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80662|TCHQD_ARATH, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000875

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000.58700.6830.42900.629000.30500.28800leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.75

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MAIHLEERGIQVLASYRIDMVGCIIYTLLLQCKSHPLAVQIQRMMI*

>peptide 2 (51 aa)
MYNLHPPPPMQISPSGCPNPTDDDITAFSYQLLAMFLAGSVLIVKHTQREA*

Sequence

>CNT0000875
ATATAAGTAGAAATAAATAGAATGATACAAAAAGGGCGTGAGTGAAGAATAGGGCATACTGGATTATATCAATAGTATTGTAAATGATGTGAGAGCCATT
TTGGAAAACCGGAACCCTTCCATGGCGATTCATCTTGAAGAAAGAGGAATCCAAGTTCTTGCCAGTTATCGGATTGACATGGTGGGATGTATAATCTACA
CCCTCCTCCTCCAATGCAAATCTCACCCTCTGGCTGTCCAAATCCAACGGATGATGATATAACTGCATTTTCTTATCAGCTCTTGGCGATGTTTCTTGCA
GGTAGTGTCCTAATAGTTAAGCATACCCAGAGAGAAGCATAGAAGAGGAAGAATAATAAAGAAGGGAACAAGTTAGCGTTGAGTTGGGCTTTTGGAGAAT
TTTGCAGGAGGCAAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G09650.1 Uncharacterized protein protein coding CNT0000875 906 324 CDS_UTR Cis