Detailed information on CNT0000889 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SB81|PER42_ARATH, E-value = 2e-82

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000889

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGSTNTVCSCVPQNISSQSFINHSQQCHVYFLLAYHVPM*

>peptide 2 (43 aa)
MNLQWSRFIEPAHLKEKTLIIFCIIYYRFSSSIIDKGRKIQGS*

>peptide 3 (30 aa)
TMNMPFYPTLSYLHSTTYIISLLKLKKKQQ*

Sequence

>CNT0000889
ACACCATGAACATGCCCTTCTACCCAACTCTAAGCTACTTGCATAGTACTACATATATAATATCCTTATTGAAATTAAAAAAAAAACAACAGTAACATCG
GAAGATTAAAAAACATAGCCTCTTAATCCTCCCATCCCCATGAACCTGCAGTGGTCTCGGTTCATTGAACCAGCCCATTTAAAGGAAAAGACCTTAATTA
TTTTTTGCATAATATATTACAGATTTTCTTCCTCGATCATAGACAAGGGGAGGAAAATTCAAGGGTCCTGATCATGGTGCTTGTTGGCAACATTGCACTG
CTTTCTGACCTCACCCTTTGTGCCAGTGAGAGGGTTGTTCTCTGAGAGCAAGGTAATGGCTCTAGAGAACTCCTTGAAGAAATAGTCTTGGCTCTTGGCC
ATTTTCTTCACATAAGGCTTGGTCCTCTTGTCATTGGCTAGTTGGTGATCCACTATCAAGAGACCCTTGCTGTCTAATATGTTTCTGTAGTAGTTGTTGT
CTAGAATCATGGGAGTGCCACGGTCGTTTCTCACGTACTGCACCGCCTTAGGGTCTGGAATGGCATCAGGGCACTTCTTCAGAATGTGAGGGACGTGGTC
AGGGTTCAGAGCTGGATCAATCTCTGGGTACAAACGGTGCACCAACTTCACACAATGGGTTCGACCAACACTGTGTGCTCCTGTGTTCCACAAAATATCT
CATCTCAATCATTCATTAATCACAGCCAACAATGCCACGTGTACTTTCTTTTAGCATATCATGTACCCATGTAAGT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G39020.1 Peroxidase; Uncharacterized protein protein coding CNT0000889 2216 776 CDS_UTR Cis
GLYMA17G01720.1 Cationic peroxidase 2; Uncharacterized protein protein coding CNT0000889 1157 507 CDS Trans