Detailed information on CNT0000897 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O04616|CUT1A_ARATH, E-value = 8e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000897

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKQDIRVGQQLISAGRPQIKNITMLITIILSMTK*

>peptide 2 (34 aa)
MQWRNSFFSSPRTVSGDVYPNRLFIFIFFSFSFS*

>peptide 3 (42 aa)
MFTTLNFKIQKCFQLPHKTMSTTLDISSNWINFLISTYRRRK*

>peptide 4 (51 aa)
MFIQIGSSYLFFFLFHFPEAFRPKAIFAGLKLKFDISPNKNLNVVHHLIED*

>peptide 5 (53 aa)
MYANLKIKTPRKMKYRKRTECILIYNNSKLEFFLKLKFSNMQNNKQGKRERRK*

Sequence

>CNT0000897
CCAAGCATATAATATAATATGGTAGAAGTGAATTATATTCACCAGGAGTGATGGCTTACCAAGGGAACTGAGTTGATGGCGCTCACAAGAATTGACGATA
GCCAAATAGCAACTATAGCCCCTCCACCATAAAGAAGTACTGTGGACTTGTTTTCAAGAGCATCCCACTGATAATGATAAATGGAGGATATTATTTCCAC
TTAGTTAAAACTTAACATACTGTTTGGTTGGAGGGGAGGGGAATGGATAGTAAATAGGGGGAGAAAATCCCTCCCCTCCTTTGAACCAGTCAGTATGTAA
ACGAAGGATTGGCAAAGAGGAAACTAGAATTGCAAGATCGAGGATTTGCTAAAACGAAGTTCAGGATAAACCAAATTGTTGAAATCAGTCAAGTAGTAAA
CTTCTTGCCTTTTCCTTCAAATCTGTGAACACCTCATTGGCATCTACTGAGGATGATTCCTCTGAAGAAGCTCTGGTCTGAAGCAGAGAAGATTTTCGGG
ACACTGAAAAAGTGGAAATAGAAGAAAACGACTAAACGATGAATAAATAAATAAAAACATATAAAAAGCAATATGACTAAGCTCAATAAATAGAACATTG
AAAATGCAACAAACAGTAAAATATTACTACTCAGGGACACACTAAAACTACAGATACAGAAGGCTTAACCAAGTGTACAACTTCAAGACTCTTAGACAAG
TATTAAATGTGGTGAGCATTAATAGCTCCATTCACATAGCAGAAACTAGCTTAATTTTCTGGATTAAACTTTGGACTTGGCAAAGTGTATCCACCCCATA
AGATGTTTACCACCCTCAATTTTAAAATTCAAAAGTGTTTTCAGTTACCCCACAAGACAATGAGCACCACCTTGGACATAAGTTCTAATTGGATAAACTT
CCTAATAAGCACTTATAGGAGAAGAAAATAAGAAAGTAAAATGAATTAAGTTACCACTCCTCACTTGATATCTCTGTAGTTTTCTGTTTCTGGGCTCAAG
CCCCTTTGTTTTTTTAAAGAAAAAAAGTTTCTCACATAAGTTAAAATTAGCCTATACATCAATTAAAACCAGCTTTTGAATAAGTTAAATGACAGCGCTT
CTGTATAAGCTTAAGTGTATAAAGTTAATTTTAGCTTATGGGAGAAAATTAGTTTTACCTTATTTTTTTCAATAAAAGCTTTAGTCGAGATGATCAAAAC
ATGGAATAAGTTCAAACTTGAAACAAGGTACAAGACAATCCTACCTCTCATTTAATCCTCTCTTCCACTTTAGAAATGTAAGAGTAAACTTCAAATAAAT
AAAGGAGAAAAAATTATATAAGAGGAAACTAGGGGGGAGAGACATACATTATTCCATGAATGAAACAAGATATAAGAGTTGGACAGCAGCTTATTAGTGC
TGGAAGGCCTCAAATTAAAAATATAACAATGTTAATAACAATCATACTATCTATGACAAAATAATAAAGCAATTAGTTTGACATGTTTGGTTGAGCTTAT
TCATAAACACTTCTAGGAGAAGAAAAGAATGAAATGAGCTTCTCCATAAGCTAAAAGTTTAGCTTATGCAATGGAGAAACTCATTTTTTTCTTCTCCTAG
AACCGTTTCTGGGGATGTTTATCCAAATAGGCTCTTCATATTTATTTTTTTTTCTTTTTCATTTTCCTGAGGCATTTCGGCCGAAAGCGATCTTTGCCGG
TCTGAAACTAAAATTTGACATCTCTCCCAACAAGAATTTGAACGTGGTTCACCACTTGATTGAAGACTAACCTCTAGACTCAACTCCATTAGTAACTCAA
ACCAAAATCTAATCGAAAATTTTACACCCCATTGTTTAGAGTCACCAAAGTTTAACACCTTTTAATGTCTTAATTTAAGAGGAATGGAAAATTCGAAGAT
TTTTTTTTTATCCATAGGAATTAACGCACCCAACTTAACCACAAAATGTATGCTAATTTGAAGATTAAAACCCCAAGGAAAATGAAATATAGAAAAAGAA
CAGAATGCATATTAATTTATAATAATTCAAAATTAGAATTTTTTTTAAAATTGAAATTTTCAAACATGCAAAATAACAAACAAGGAAAAAGAGAAAGAAG
GAAATGAAAGAGTACCTGAAAAGTTGTTGAGGGAAGGTGAGAACAAAGTGGTTTTGGTGTTGGAGACGCGAGGAGGGAGAGAAGGCAAAGCAGAGCAGCG
GGTAACGTTGGTGGTGGTCGGAATCCTAGGTGGGAGTAGCACCGTCACTGCCGCCGCCGCTGCCATTTTTTTATTATTATGAAAATGTGACGCGTATCAC
TCTATCTATCCCCAAACCAAAAAATTTGGAACTTTGGTTGGTTTTCC

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G06660.1 Uncharacterized protein protein coding CNT0000897 2066 753 CDS Cis
GLYMA07G06660.1 Uncharacterized protein protein coding CNT0000897 1312 482 CDS_UTR Cis
GLYMA07G06660.2 Uncharacterized protein protein coding CNT0000897 2066 753 CDS Cis
GLYMA07G06660.2 Uncharacterized protein protein coding CNT0000897 1312 482 CDS_UTR Cis
GLYMA16G03230.1 Uncharacterized protein protein coding CNT0000897 1171 488 CDS Trans
GLYMA16G03230.2 Uncharacterized protein protein coding CNT0000897 1171 488 CDS Trans