Detailed information on CNT0000904 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000904

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0951.7570.59900.34800.34203.5761.431.5551.0192.0544.0061.619leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMRQQNQLLQRFLKLHHLALYVCCYLPNTNERNKRSLLSYM*

>peptide 2 (36 aa)
MLSLMIGKCVWHKRQTFAKPWFETFPNAKTKTTLHG*

Sequence

>CNT0000904
TGAGAAACTAAAGCCACTAGAATAGCTCCCAGAACTGCTATTTTTCTCCAATCAGTTGATGATGAGGCAACAGAATCAACTATTGCAAAGATTCCTCAAA
CTCCACCATCTGGCTCTCTATGTTTGCTGTTATCTGCCAAACACAAATGAACGCAATAAGAGGTCATTACTAAGTTACATGTAGATTTTCCTTCATGCTG
AGCTTGATGATTGGCAAGTGTGTTTGGCACAAGAGACAAACTTTTGCCAAACCATGGTTTGAGACTTTTCCAAATGCAAAAACCAAAACTACACTACATG
GTTAACTAAAAAATTGTAGCATACTCTGGCACTAGCTTCATCTAATCCTTGGAGGGCATCTTCTCCAATCTTGTCAAACTCAGCCTTCGCTTCTTCACCA
AACTGGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G17631.1 Uncharacterized protein protein coding CNT0000904 896 319 CDS Cis
GLYMA18G42480.1 Uncharacterized protein protein coding CNT0000904 585 330 CDS Trans