Detailed information on CNT0000908 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80842|CFTSY_ARATH, E-value = 1e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016489, E-value = 2e-17 (S. tuberosum)

Expression of CNT0000908

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.881.6312.15301.5351.0152.621.0422.243.2512.7432.9962.0421.1621.033leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (69 aa)
QKLSDIACKRKIVYTQRASKATTALHLKIMYTYSQCLALPNNGFHNKVPSFLLTRCCSECSCQAVFANK*

>peptide 2 (59 aa)
MLRFQFFPSIPISGPVFAFFSFQVELFTASIVPVARFDLELFYHLFPLSISILILKCDL*

>peptide 3 (40 aa)
ETFRHSMQKEDCIHSACLKSNNSSAPQNHVHLFAMLGPSQ*

>peptide 4 (44 aa)
MQVTQNSNKLIIHFFGVFHSETESKAYNSKLTPSLHPKWLLEIF*

Sequence

>CNT0000908
CAGAAACTTTCAGACATAGCATGCAAAAGGAAGATTGTATACACTCAGCGTGCCTCAAAAGCAACAACAGCTCTGCACCTCAAAATCATGTACACTTATT
CGCAATGCTTGGCCCTTCCCAATAACGGTTTCCATAATAAAGTGCCATCTTTCCTGTTGACCAGGTGTTGCTCTGAATGTTCATGTCAAGCTGTTTTTGC
TAACAAATGATTCCGAATAGTTACATACTTACATAAACAACAATGTCAGAAGAACAGATTCAAAGTTGAAACGACAAATATGCAAGTAACCCAAAATAGT
AACAAACTAATAATCCATTTTTTTGGGGTTTTTCATTCAGAAACTGAATCAAAGGCCTATAACTCCAAGCTTACCCCATCCCTGCACCCCAAGTGGCTAT
TGGAAATATTTTAAATTGACTTAATTTCACTTTTAGTCCTTCAATTTTCTCAATTTTGCGGATTTCTTCCATTTTGCTTTTACAGATTTAATCCCTCTAT
TATTTTAAGTGTGCAACTTTAGTCCGTCTGTTAACTTGACATCCAATATTTAGTAGAAATATTGATGTGGCACTTTAGTGCACTGTCATGTCATCATTTC
TGTTAAACACAGAATGTTAAGGTAACATATGGACCAAAATTGTACTATAAAATAGTGGTGGATCAAATTGGTGGGAAAAAAATGGAGGGATGAAATTCGT
GAAATTGAAAAAGTAAAGAAGGAGAACATTTTGTAGGTGACATTTTAACTGCAATTATGTATGAAAAGAATTCAAAATCATATTTGAAAGGAATGAAAAG
GACAAGTCATGATGTACATACCAAACCCACAATATTGGTTTAAATAAAAATGGCATTCACAAAGGACTCCGCATCAAAGGGTTGAAGGTCTTCAACACCT
TCACCAACACCCACAAATTTTACAGGGATTCCAAGCTCATCAACCACACTGACCTGCCAACATAAATTAGTCCTGACAATGATCACCCCAGCTACGGAAA
GTACTACCAATAATGAAAACTTATTCATCCAAAAACTATTAAATATTCATTAAGAGAGGAAAAAAAAATGAAGAGAATACCACACAGCCACCTCTAGCAG
AACCATCCAGTTTGGTCAAAATTAAACCAGTAACACCCACAACCTGTCTCAAGTTCAAAGGATTCAGAGTCAACAAATTCAATAAAAGTTGACAGCAAGT
TAATACAGAACCATGAGGCAACCATAATACTAATACTAATTACTAAATAATGGAATATTAAGGGCAAGAATATCTAAATTATGCAAAGCAATGGATAATA
AGACTTTGAGAATGAGAAACTCGAAATTCAGCACCACCATACCTGCAAACTAAACATATTTGTGACTGACCATTCATTTGGCTGCAGTATGCTTGATAAC
GGAATAAACCTCTAAACATTCATTCCCTTACTGATATTGTCTTTTTAAAATATGAATTATGCTTCGTTTTCAATTTTTTCCCTCTATCCCCATCTCAGGG
CCTGTTTTTGCTTTCTTTTCTTTCCAGGTTGAGCTGTTCACTGCATCTATTGTACCAGTTGCAAGATTTGATCTAGAATTGTTTTACCATCTCTTCCCAT
TGTCTATCTCAATTTTAATATTGAAATGTGATCTTTAGTTTCAAAGATCCAATTCCCATCCCAAAGAAGCAAGGGGTGAGGTGCGTGGATAACTATGGTA
GGTGACCCTTTGGATTAATTTTGGATATGCTTTGATACCATCTTATGAATGTAG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G01770.3 Uncharacterized protein protein coding CNT0000908 1240 674 CDS_UTR Trans
GLYMA03G01770.3 Uncharacterized protein protein coding CNT0000908 322 401 UTR3 Trans
GLYMA03G01770.4 Uncharacterized protein protein coding CNT0000908 1240 674 CDS_UTR Trans
GLYMA03G01770.4 Uncharacterized protein protein coding CNT0000908 324 402 UTR3 Trans
GLYMA07G08240.1 Uncharacterized protein protein coding CNT0000908 1560 572 CDS_UTR Cis