Detailed information on CNT0000913 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000913

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EWVKLVFRHSFRKACSLITKDEIFEWETELAPLE*

>peptide 2 (36 aa)
MKRCPLWSSTTERERTSTPSCMAMSKAAMISASKHSL

Sequence

>CNT0000913
TGAGTGGGTAAAGCTTGTCTTCCGGCATAGCTTTAGAAAGGCTTGCTCCCTGATAACCAAGGATGAAATATTTGAGTGGGAAACGGAATTAGCTCCTCTA
GAGTGAGTAAAGTAAGTAATTCGTGTGGATCATGAGTAAATTAACAGATGATATTTAAGCGGTTATGAATAACACAAATCAAATCAAACCATGAAGCGCT
GTCCATTGTGGAGTTCAACAACAGAGAGGGAAAGAACATCAACACCATCATGTATGGCCATGTCAAAGGCTGCCATGATATCAGCATCAAAGCACTCATT
G

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G39990.1 Subtilase family protein protein coding CNT0000913 618 222 CDS Cis
GLYMA07G39990.2 Subtilase family protein protein coding CNT0000913 618 222 CDS Cis
GLYMA07G39990.3 Subtilase family protein protein coding CNT0000913 618 222 CDS Cis
GLYMA17G00807.1 Uncharacterized protein protein coding CNT0000913 159 145 UTR5 Trans