Detailed information on CNT0000914 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000914

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6240.5840.640.6820.3470.6230.2440.4571.1722.8510.8421.6461.2962.2831.153leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFWRFSILLVVGTKTKIFKTIWTKNFLKYRDKTKIKAYHRDQQCI*

>peptide 2 (29 aa)
MINWGTKFIILPIYLYVCRGRGCHRSCCS*

>peptide 3 (54 aa)
MVKVLVRNALFNLKETFLLGLGYNSLNMVCNSIVHDKLGDQIYNFAYLFICMSG*

>peptide 4 (62 aa)
MCLLFMCPHHHIVVGINEAAASFSTSFLCCSGLLINVFAPSGMMFSLKFSFSKQEIEHCKIS*

>peptide 5 (75 aa)
LFLTHERSLIHLVFLFSFSLISAYLEVCSSQALVLIVLFCFDSDSYSFILVWFWPLQYTVHWSKWLYPPRHVLAF*

>peptide 6 (29 aa)
MVLASPVHRTLVQMVVPSKTCFGVLAYYW*

>peptide 7 (40 aa)
MSLKPLLIFSHHSCLASKKIITEKIFTSLIPTYDLDESIA*

>peptide 8 (31 aa)
MSTCFGCKTKLLHMVRCESCDGQGPCSECFV*

>peptide 9 (79 aa)
MNFAQKLQLPLFSKLINPQMVRTNNPVLFIMEKINYLTNLSMLQGGKFTLITTIAFCNSLICLFNLIMTGLHLQEHMEH*

Sequence

>CNT0000914
GTTGTTTTTAACTCATGAAAGAAGTTTAATTCATTTGGTTTTTCTTTTTTCTTTTTCTCTCATAAGTGCTTATTTAGAAGTTTGTTCAAGCCAGGCCTTG
GTCCTTATAGTTTTATTCTGTTTTGATTCTGATTCTTATAGTTTTATTCTAGTATGGTTTTGGCCTCTCCAGTACACCGTACATTGGTCCAAATGGTTGT
ACCCTCCAAGACATGTTTTGGCGTTTTAGCATATTACTGGTAGTAGGGACCAAAACTAAAATTTTTAAAACTATATGGACCAAAAACTTTTTAAAGTATA
GGGACAAAACCAAAATTAAAGCATACCATAGGGACCAACAATGTATTTAAACCTTCATTTATATTTTAAGTTGCTTCCCTCATTTGCTTGCTGAATTGGC
AATAGTTGCTGGAATACTGAAGGAATTTACAAAGTTGAAAAAGAAAAGGTTGTCCCAGTGGAAGAAAAAACTACAACTCTTACAATTACTACTTGTACTT
GAGGCTATGTTTGGGAGTGAGGTTTAGGAGGGGGAAATGAAGGGAATGGAAAGGAAAGGTTTTTAGGGAAGTTTCCCTTGTTTTGGAGTTTTGAGGGGTG
AGGGTCTTGGGATTTTCAGAAGCCCTCCCCCTCTTCTATGCAATTTCTAGGTTCCCCCACTTTGGGAGATTTTGTAGAAAAATATAATCTAATTACTCAT
TGACCCTCAACCCCTTTCCTGATTACATGTCTCTCAAACCATTGCTCATTTTCTCTCATCACTCTTGTTTGGCTTCAAAGAAAATTATCACTGAGAAAAT
CTTCACCTCTCTTATCCCAACATATGATTTGGATGAATCCATAGCATAGCAGCCAACCCGTATTTCCTTTGTTTTATCAAGATCATATACAACCCATAGT
AGTGATGTGTCTATTATTTATGTGCCCCCACCATCACATTGTGGTCGGGATTAATGAAGCTGCAGCGAGTTTCTCTACTTCATTTCTTTGTTGTTCAGGT
TTACTAATCAATGTCTTTGCTCCATCAGGTATGATGTTTAGTTTAAAATTCTCATTTTCCAAACAAGAAATTGAACATTGCAAAATTAGTTAGTTATGCT
TGGAATTCAGCAATAGTACCATTTTTTTTTTATGAAATAGAGAATTATATGGGTTTAGCTCCTGAATATTTTTATTTTGTTTGGTCTATGGTATTTTTTT
TAAACAATCGCAAGTAAAGTGATTGCAAACAAATTACACACTATAATTTCTGTTAGTGGTGTTACGTTGATTAAGTTTGCCGGGTGGAAATATGTTTCAA
TCATGAAGGTTACCTGTCAAAGTGAAGAATGCTGCTTGCTATTGTTAATTCTTGAACTGCATTAGGTGTATCTGTAAACATGGGTGGAAGGTTTCTATAC
TATCCGCAAGTAAACTAAAACGTGTTTCAATTATGTACATATAGATACATAAATTAATCCTCAAAAACTAGTGATGGGAACTTGGGGGTTTATTGAATAA
TTGCAATTATTATTATTAATATGAATTTTGCTCAAAAACTACAATTACCATTATTCAGTAAGCTAATCAATCCCCAAATGGTGAGGACAAATAATCCAGT
TCTATTTATAATGGAAAAAATCAATTATTTGACTAATCTTTCAATGCTGCAAGGAGGAAAATTCACATTAATAACAACAATTGCATTTTGTAACTCACTA
ATCTGTCTCTTTAATCTGATAATGACAGGCCTGCACCTTCAAGAACACATGGAGCATTGAATATACTGTAACTGTTCCAGCTCAATGCCACCCTTGGCAT
TCTCTTTGCCAACCAAGTCAATTATGCTGCCAACAAGGTGAAAGCATTGAATTAATGGTTTAGTGAGAGTGGTGCTGGTCAAAATCAAAATTGATGGCCT
GATCAGAGTTATTCTTCATATAGATTCTGCCAGAGTGCCAGGTAGGAAACCAAATTATGACCATTTCTGTGACTTCTCTCATACTCAAAAGTCTAGCACT
TGCTTGACTTCCAGTGTTTTGAGCTTTCATAAGGTCATCCTATGCCCTTATTGAGATTCTTTTTTTGGTGATTTCCCTTATTGAGATTGTCCTTACGAAT
TGGCAATATCAGTCACAGTTGATAAACAGTATAACTAATTAATGCCATTTTGAGTGCAGTATTTTTATTTTCTCTACTTTGATTGGCTATATCAAATTAT
TTACAATTGGCCTTGTTACCCCGCAAGATCATCTCTAAAATCTAAATCATGCTTGTGAAATGTGATGTCATGCTGGAAAGCCTTTATTGGCTGATTCATG
ACTAGAACTACTTGTACAGGCATTGATTAAAAACAATTGCTTCACTCGCTTTGTTGTATTATATAGGGATTGAAGTTATGAACCCCAATATTGGTCAATG
CTGGCGAATAGCAAGTGAATTTATTGTGGAAGATTAGTCCATGGAATGAGGTTACAATGGACATGTGATGTCTACTTGTTTTGGCTGCAAAACTAAGCTC
TTACATATGGTTAGATGTGAATCATGTGATGGTCAAGGTCCTTGTTCGGAATGCTTTGTTTAACCTAAAGGAAACCTTTCTATTGGGTCTAGGATATAAC
TCTTTAAATATGGTATGCAATTCCATTGTCCATGATAAACTGGGGGACCAAATTTATAATTTTGCCTATTTATTTATATGTATGTCGGGGTAGAGGGTGT
CACAGATCATGTTGTTCATGACTTCCTAAACACTACATAGGTCTAAGGCTATTGTGTAGTATCCTTTTTAAGGCCCAATGTGCAGACTCAACCCTGCATT
TGAAAAACACAAAAAAGTAAACACAAACAATTATTTTTATCCATTGATGTCTTGTTA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G03960.1 Uncharacterized protein protein coding CNT0000914 140 110 CDS Trans
GLYMA20G36934.1 Uncharacterized protein protein coding CNT0000914 104 82 UTR5 Trans
GLYMA20G36934.2 Uncharacterized protein protein coding CNT0000914 104 82 UTR5 Trans