Detailed information on CNT0000920 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C7S7|ERO1_ARATH, E-value = 1e-69

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000920

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.0484.9866.40705.0283.3834.5896.0425.5337.5224.6536.3976.2050.7751.253leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVSNIPIHQKLILNSLHLKRDRRPVRNSRG*

>peptide 2 (58 aa)
MVRDPLDLRRYAKTEDGDDLTQALVEEIIEKCLGFEVEQRSLVIRIKSYAKRKRFCIN*

>peptide 3 (55 aa)
MHTIHFYIIIYLSSFLHIPQYLLCNIIEGKHFQFFKDTCTFYNIVSILPYPFQFI*

>peptide 4 (54 aa)
MYDRVLRYPDHVRNLYFTFLFVLRAVTKALDYLEQAEYDTGNPNEDLTTQSLIK*

Sequence

>CNT0000920
GATTATATGTGAATTTCATTATGATTATAGTTGGAGATGGTGAGGGATCCTCTGGATCTGAGGCGGTATGCGAAAACTGAGGACGGTGATGACCTAACTC
AAGCATTGGTGGAGGAAATCATAGAGAAATGTCTTGGTTTCGAAGTTGAGCAGAGGAGTTTGGTGATTCGTATCAAGAGTTATGCCAAGAGGAAAAGATT
TTGTATAAATTGATATCTGGTCTTCACTCCTCCATATCAATTCATATAGCTTTTGATTATCTACTTGATGAAGCTACAAATTTGTGGGGACAAAATCTTA
CTTTGATGTATGACCGAGTCCTAAGATACCCTGATCATGTCAGAAATTTGTATTTCACTTTTCTCTTTGTTCTGCGAGCAGTAACCAAAGCTTTAGATTA
TCTGGAACAGGCAGAGTATGATACTGGTAACCCCAATGAGGACCTTACAACACAATCCTTGATAAAATAGCTACTTTACAACCCCAAGCTTCAAGCTGCA
TGTCCAATTCCATTTGATGAAGCCAATTTGTGGAAAGGCCAAAGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTTAGAAACATCAGTGCATTGA
TGGATTGTGTAGGATGTGAGAAATGTTGATTATGGGGTAAGCTATATTATATATCTTCATATGTCCTTTTACTTGTATCTGCACAATGCATACAATTCAT
TTCTATATTATTATATATCTTTCTAGCTTCCTCCATATTCCACAATACCTTTTGTGTAATATTATTGAAGGAAAGCATTTTCAATTTTTTAAGGACACCT
GCACTTTTTATAATATTGTTTCAATACTTCCTTATCCTTTTCAATTTATTTAATTATTGAATGGTTTCAGTTCAAATTATTTAATTAATTCCTTTCACCC
ATTTTTTCTTAATTCTTTTTCAAAATAATTTCTTGATATTTTTTTGTTAACTTAATATTTTTCATGTGTGATTCGAACTCGAGTGGTAATGGAGACGATT
TTACAAGCAACGTGAAAAGGCTCATAATTGATTTGGTCACCATTTGAAGGAAGAGAATGTGAAAGAGTGAGGTCAGAGTTGCCAGTAGACGAAGACAATC
GTCATCAGCTGCAAAGGAATGAGGTAATTGCATTGACGAACCTTCTCAATCGACTCTCGGAATCCTTCAAATTCGTCCACGAAGTGGGACCTACAGTTGA
AAGAATCATGGAAGGAGGACATTTTTCTGCTCATACAAGAACTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAGGTGTGTATGTG
CGATTCTAGTGTTGACCCATAAGGGGATAATAAAAACCCTTTTAGGCTAACACTTTATAAGAAGACTATGGTCTCCAATATACCAATCCACCAAAAGCTC
ATCCTTAATTCTCTTCATCTGAAGAGAGATCGACGCCCCGTTAGAAACTCAAGAGGTTAGGTTGAGTAAAAACCATTACGCTAGGCATCAGCTTTCCTTG
TTGAAGAATGCTCGAATCAGGAACAGACAATGGATCTAGGTATTTATTTTAATCCGTCAGATATCGGGTATGGGTATG