Detailed information on CNT0000924 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VYD9|CAF1M_ARATH, E-value = 2e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000924

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.7512.7233.3098.4236.4723.7353.0092.41910.6915.5169.61217.32713.1215.5353.357leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516171819

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNKLWFGGERIMSPGRMDTFLKIENQLTTLVACVWEKSNRLCNTTISTAN*

>peptide 2 (34 aa)
MLLLSNLLLDGVFTSISYKTRVRCLQNNLAQGPF*

>peptide 3 (39 aa)
APTSFSISMRFSSSSSCNSFLHNSTIHSFILLLSLTAWK*

>peptide 4 (52 aa)
MLWKPHEPVYPRLIKTTINGLSIKETKEIWKRGLAVPALTKFGHGALYSGDF*

>peptide 5 (52 aa)
MVPCILVTFENEQIVVWRGKDYEPRKDGYFLKDRESVDDIGGLCVGKEQQAM*

>peptide 6 (34 aa)
LPLPSLYQCAFLLLLPAIPFFTTPQFIHSFFFCL*

>peptide 7 (55 aa)
MKRRGLHSSMESQPRLLPTFCSASIHTVCSAATNVVPALITSFTLIHAPYYFHFT*

>peptide 8 (96 aa)
SHFLLYINALFFFFFLQFLSSQLHNSFIHSSSVSNGVEMMGIVKGLSRNNAHWYGGGGGDSGWSLGQKKRRRPLSLAEQLHGDTRNFFYNKEKGVV*

>peptide 9 (30 aa)
MDKNNLKVKGKIVLLVPHFTSNFAIGLLVI*

Sequence

>CNT0000924
GCTCCCACTTCCTTCTCTATATCAATGCGCTTTTCTTCTTCTTCTTCCTGCAATTCCTTTCTTCACAACTCCACAATTCATTCATTCATTCTTCTTCTGT
CTCTAACGGCGTGGAAATGATGGGAATAGTAAAAGGTTTGAGCAGGAACAACGCACATTGGTATGGCGGCGGCGGCGGCGACAGTGGGTGGAGTCTAGGG
CAAAAAAAGCGAAGAAGGCCCCTGTCCCTTGCGGAGCAATTGCACGGCGACACTCGCAACTTCTTCTACAACAAAGAGAAAGGGGTTGTATGAAAAGGCG
TGGGTTGCATTCTAGTATGGAATCACAACCTAGACTTCTCCCCACATTCTGTTCTGCTTCAATCCACACTGTCTGTTCCGCCGCCACCAATGTTGTTCCT
GCTTTGATTACATCCTTCACACTGATCCACGCCCCCTATTATTTCCACTTTACTTGATATTCACTAACCTATCATACATATTTATATTCACTTTGGTTTT
ATTGTTGATAGTTCTTGTGTGTTTGATGTTTAGACGTTGGTGCCTTGGTGGGCATTAATTAGGGTAGTAATAAGATACTTATCTATCTATTTTGATTTGT
CTGCAAAAAATAAATGCTTTTGTTGTCAAATTTGTTGCTGGATGGTGTTTTTACCTCAATTTCATACAAGACCAGAGTGAGGTGCTTGCAAAATAACCTT
GCTCAAGGCCCCTTTTGATAGAATATTTGTGCTAAGTAAGTAGAGATCTGATAAGTTTTTCTTAGTTGTATTAGAGCATCTTTAGTTGAAGATCTTTAGG
TGAAGATCCGGTCTTGTCCACATATATTATACAGAGGCAGGAATTATAATCCGAAAAAGAGGCCTGTAATACCTGTCATGTTGTGGAAGCCCCATGAACC
TGTATATCCCCGACTGATTAAGACAACAATTAATGGCTTAAGTATTAAGGAAACGAAAGAAATTTGGAAGAGAGGACTAGCTGTTCCTGCTTTAACAAAA
TTTGGACATGGTGCCCTGTATTCTGGTGACTTTTGAGAATGAACAAATTGTGGTTTGGAGGGGAAAGGATTATGAGCCCCGGAAGGATGGATACTTTCTT
AAAGATCGAGAATCAGTTGACGACATTGGTGGCTTGTGTGTGGGAAAAGAGCAACAGGCTATGTAACACCACAATCAGCACAGCTAATTAGGAATCAATT
CATGGTTTTGCTGACAGCCAAGCTTGGAAGAGACTTTGGTAATTCATGATGTCAGAGAATAATGGAGGAAACTCAGTTCAATAGTTCAGTACGCAAGTTT
GTCACCATTACAAAATTGCCAGTTTGATATGAAGAGCTAAATGTACAAATCAGTGTTTTTTTACTGTTCATGTTTGGGTTAGTTTAGTTTTAGAATTACT
TATTTGAAAACCTATTTTGTAAGGTTTTGTTAACACAATGAGTGAAGGTTACTGCTGAATCATATGAAACGAAAATGGACAAAAACAACTTAAAAGTAAA
AGGCAAAATTGTACTTTTGGTCCCTCACTTTACCTCCAATTTCGCAATTGGTCTTCTAGTAATTTAATTCATAAATTTGGTTTTCCTGTTTTATAAAATC
CAGCAATGTTGGTCCCGAAC