Detailed information on CNT0000925 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4JVA6|SFH6_ARATH, E-value = 2e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000925

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.5195.0675.2791.6241.7121.4090.9280.9252.6073.6852.8483.0542.042.7171.442leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFFDLFFYVRFGGEDWRRHWRFLRSDVWQSEVCNRF*

>peptide 2 (59 aa)
MFGNPKFATDSETSLSLETRQFLSSHVLLAAYFLNIFLFLLYMQFAFIYRLEKKLHTHM*

>peptide 3 (56 aa)
MFKGRSAGKQERSQRTVERVHLLKVLETRKSALQKSKAWHLLVLLLLVLKLTIYRL*

>peptide 4 (49 aa)
MAFARAVTAGFEIDYISPLMSFAECFGASRMKDARTKFRNLWRRKHETG*

>peptide 5 (39 aa)
MLLWKLYSGCWKQVSKQIAYSYGCQFLVCPIILLMLRNY*

>peptide 6 (31 aa)
MDASFWFALLFCLCFEIIDHKQSLDSYGTKC*

>peptide 7 (35 aa)
MPVFGLPYYSAYASKLLITSRALIPMEQNVRSAHR*

>peptide 8 (29 aa)
MENEARALQSCDHGSHPLSFLLLVLCSMQ*

>peptide 9 (41 aa)
MIDIIMALRTLQSLSRNSLPDCRRLMVIITLRCVVLFPETA*

>peptide 10 (74 aa)
MHAQNSGIFGEENMKLDNGLKLKLLKRCPIAQTWRWKKLMILSSLIKFLFMPSKSHSLSSLIGFDGCFLNPKTK*

Sequence

>CNT0000925
AAAATGAAATAGAAAAAAAATGTTCATTCTAAAGTTTATATGTGATGGTGAAAATGAACAAAATCTTTATTGTTTCTTAATTTTAAAATTTATTGTGTAA
GTGCTAATATTTATTGGTGGGTTGTGTGCTTTTACTCTTTTCCTTTCAATTTTATTTGGTTAATCTGTGTGTGGCTCTACTGTTCCGCTCCCCACTGTTA
GGAGATATTGGGGTTATTAGTCTTATTGTCCAAATTAAAGGCTTGGTGGGCTTGTACTAATGACTTCAATCATTTCACCGGATTCAACCGCTCGCCATCA
CACTGTCTAGGAACCGCAACCGCAATGCATTTCAGAATTATTTTCTTTTTTAATTTTTTTTTGTATAAGCATGTTTTTTGATCTGTTTTTCTATGTTAGA
TTTGGAGGAGAAGATTGGCGGCGACATTGGCGATTTTTAAGAAGCGATGTTTGGCAATCCGAAGTTTGCAACAGATTCTGAAACCTCGCTCTCACTGGAA
ACTCGCCAATTTTTAAGTTCACATGTGCTCCTCGCTGCGTATTTCCTTAATATATTCTTGTTCTTGTTGTACATGCAATTTGCTTTTATTTATCGCTTAG
AGAAAAAATTACACACACACATGTAAAATAAAAAATAAGCTGGAGAATTCTCAATGATCTGGGTTTTTTTTCCTATTTTATTGGGTTTTTGTGCTTCTGA
GATGTTGGTATTCTTTAACTTCTGCCAAGAGTAGTTTTTTGTGATTTTGGCTCCAACTTTATAGTATATTTTAAAGGTTGGAGTTATGCGAGTGACCAAA
AGATGTTTCAATTGGCAGAGGGGGAAGAACAAGTCTGACTTTTTAGCTTTTTTTTTGGTGCGTTAGTTTTTATGGTTTCATGTTGGCAATGGAGAAAGAT
GGACCTCTAGTTTTTTATCTTTGCATTTACTACTGTAATCTAAAGTTCTATAACATATAAGTAAGACTTTTGTTGTATGATTGACATTATCATGGCCTTA
AGAACTTTACAAAGTCTGTCCAGGAACTCATTACCCGATTGTAGAAGATTGATGGTGATAATTACCCTGAGGTGTGTTGTCTTGTTCCCTGAAACTGCTT
GATGCTTCTTTGGAAACTTTACTCAGGTTGTTGGAAACAAGTATCAAAGCAAATTGCTTATAGTTATGGATGCCAGTTTTTGGTTTGCCCTATTATTCTG
CTTATGCTTCGAAATTATTGATCACAAGCAGAGCCTTGATTCCTATGGAACAAAATGTTAGAAGTGCTCATAGATAACAAGCTTGAACCATACTTGCTCC
CTGTAGTCCCTGAAGAGGGAAGGGAAGATAACATACGTTGAAGACATAGCTAAGGGTCTTAAGAACGATCCAGCTACACCAGAAGCAATGTTCAAAGGCC
GTAGTGCTGGCAAACAAGAACGGTCCCAGAGAACTGTTGAAAGAGTTCATCTTCTGAAAGTCCTAGAGACACGTAAGTCAGCATTGCAGAAAAGCAAGGC
ATGGCATTTGCTCGTGCTGTTACTGCTGGTTTTGAAATTGACTATATATCGCCTTTGATGTCATTTGCTGAATGCTTTGGTGCATCTCGCATGAAGGATG
CACGCACAAAATTCAGGAATCTTTGGAGAAGAAAACATGAAACTGGATAATGGCTTGAAATTGAAGCTGCTGAAACGGTGTCCAATCGCTCAGACTTGGA
GATGGAAGAAATTAATGATTCTGAGCAGCTTGATCAAATTCTTGTTCATGCCTAGCAAAAGTCACAGCCTATCCTCATTGATTGGTTTTGATGGTTGTTT
TTTGAATCCAAAAACCAAGTGAAAAGAAAGGGCAAAATGATCATTTTTCCTAGATTTCAGGCATCCATTCGCCCATGCTAGCAACTAGCTCGTTTGGGCT
AATCAAATTTCTTCAGACTTAAGCAACCAACTCACTTGGGTGAGTTATAGCTCGCTTGGGAGAATTTATGCCTTCATCACTAAGTAACAAATTTTCTTGG
GCGAGCTACAGTTCGCCTGGCGAATTTGTCTACACCTCTTGAATTTTTTTCTATAAATAGCCATGCAAATGAAGAAGAAAGGGACATCCAAAAGCAGAAA
GAAAATGTGAGAAGCTAAGGAAGTGAAGAAGAAAATGGAAAATGAAGCCCGGGCGCTACAAAGTTGTGACCATGGATCGCATCCTTTGTCATTTCTCTTG
TTAGTCTTGTGTTCTATGCAATGATCAGTTAGTTTTTCCAAAGGATTGGATGCAATCTTTGTACCCTTATGTATCTCTTTTGATATTATATATATGTATG
AATTTTTCTACTCATTATTGGTGATTTCATTCTGTTCGTAATACTTGATTCTATTTGATCACTAGTTTCATGAAATTATATTTTAAGTTTGATTGGGAAG