Detailed information on CNT0000926 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80842|CFTSY_ARATH, E-value = 4e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016444, E-value = 9e-34 (S. tuberosum)

Expression of CNT0000926

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.1131.1492.21700.15200.149000.2490.1360.14800.4360leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFRGLFRYQAYCSQMNGQSQICLVCRYGGAEFRVSHSQSLIIHCFA*

>peptide 2 (34 aa)
MVVLNFEFLILKVLLSIALHNLDILALNIPLFSN*

>peptide 3 (30 aa)
MPFLFKPILWVWKDGTLLWKPLLGRAKHCE*

>peptide 4 (43 aa)
MVASWFCINLLSTFIEFVDSESFELETGCGCYWFNFDQTGWFC*

Sequence

>CNT0000926
TCATAAGATGGTATCAAAGCATATCCAAAATTAATCCAAAGGGTCACCTACCATAGTTATCCACGCACCTCACCCCTTGCTTCTTTGGGATGGGAATTGG
ATCTTTGAAACTAAAGATCACATTTCAATATTAAAATTGAGATAGACAATGGGAAGAGATGGTAAAACAATTCTAGATCAAATCTTGCAACTGGTACAAT
AGATGCAGTGAACAGCTCAACCTGGAAAGAAAAGAAAGCAAAAACAGGCCCTGAGATGGGGATAGAGGGAAAAAATTGAAAACGAAGCATAATTCATATT
TTAAAAAGACAATATCAGTAAGGGAATGAATGTTTAGAGGTTTATTCCGTTATCAAGCATACTGCAGCCAAATGAATGGTCAGTCACAAATATGTTTAGT
TTGCAGGTATGGTGGTGCTGAATTTCGAGTTTCTCATTCTCAAAGTCTTATTATCCATTGCTTTGCATAATTTAGATATTCTTGCCCTTAATATTCCATT
ATTTAGTAATTAGTATTAGTATTATGGTTGCCTCATGGTTCTGTATTAACTTGCTGTCAACTTTTATTGAATTTGTTGACTCTGAATCCTTTGAACTTGA
GACAGGTTGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGT
AAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCGGAGTCCTTTGTGAATGCCATTTTTATTTAAACCAATATTGTGGGTTTG
GAAAGATGGCACTTTATTATGGAAACCGTTATTGGGAAGGGCCAAGCATTGCGAATAAGTGTACATGATTTTGAGGTGCAGAGCTGTTGTTGCTTTTGAG
GCACGCTGAGTGTATACAATCTTCCTTTTGCATG