Detailed information on CNT0000929 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0DH40|CCB15_ORYSJ, E-value = 1e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000929

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.2245.7365.4863.6080.9611.8661.9760.9673.954.8823.9054.2654.7156.0344.269leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTIRILFLSQSYTACQDQAYGIPFLFSFNCIFLVLGLV*

>peptide 2 (77 aa)
FLYPLLFVTFPLIAKPIEQLNIKFLFSTWNLLVLFHFDSVHRSSLLPLLDPLHSRSNQRLIITLLPDPSFFPFPFCV*

>peptide 3 (42 aa)
MLLLLQEVSLGQFSRNSVAWIFVLLLFFLQGRTCQHCLEILV*

>peptide 4 (71 aa)
MNKATLPLTLIGDGDGDRKVTKVAEPGDLVIALHVLNTITGHAIGANPAIPRMFPNMFPLVISQRKSQTEG*

>peptide 5 (73 aa)
MSYLVWYIKGSTPPVKEMEHMAFFLAEVSLIHNPTVIFYWPFSNRCFCCIDGSVYPRNEPFRDKHFEALYWLH*

>peptide 6 (44 aa)
MKLSLDKSAQGERISDISKNGHIASYRLMTLCAYQTLLMLVNKC*

>peptide 7 (75 aa)
MAQCTLGMSPFGTSTLKHYTGYTEEQLSVCAKITVNLHAAAAPGSKLRAVFKKFCSLDLCAVALLSPGKNLSTLS*

Sequence

>CNT0000929
ATTTTTATATCCTCTGCTATTTGTAACTTTCCCTCTTATTGCAAAACCAATTGAACAACTGAACATAAAATTTCTCTTTTCAACCTGGAATTTGCTAGTC
TTGTTCCACTTCGATTCAGTTCACCGATCTTCATTGCTTCCTCTTTTGGATCCGCTTCATTCGCGTTCAAACCAACGACTAATCATAACTCTTCTACCGG
ATCCCTCATTTTTTCCCTTTCCTTTCTGCGTTTAATTCATATCGGAGAAGGAGAGAGAGAAACTGCGACATGAACAAAGCGACTCTTCCGTTGACGTTAA
TTGGCGATGGAGACGGTGACCGAAAGGTGACTAAGGTGGCGGAGCCCGGTGACCTCGTCATTGCGCTTCACGTCCTCAACACCATCACTGGTCATGCCAT
TGGGGCAAATCCTGCAATTCCTAGAATGTTTCCAAATATGTTTCCACTGGTTATAAGTCAGAGAAAGTCACAAACAGAAGGCTGATTGCAGTCATGAAAT
TGTCTCTTGACAAGTCTGCCCAAGGAGAAAGAATTTCTGACATAAGCAAGAATGGTCATATTGCTTCCTACAGGTTAATGACTTTGTGTGCTTATCAGAC
ATTGCTTATGTTAGTGAACAAGTGTTGATGATGGAGAAAACAATTCTTAGGAAGCTTGAATAGTACTTAACAGTTCCAACATCCTATGTCTTACTTGGTT
TGGTATATCAAAGGCTCCACTCCACCTGTTAAAGAGATGGAACACATGGCATTTTTCCTTGCTGAAGTTTCTTTGATCCACAATCCTACTGTAATCTTTT
ACTGGCCCTTCTCTAATCGCTGCTTCTGCTGTATTGATGGCTCAGTGTACCCTAGGAATGAGCCCTTTCGGGACAAGCACTTTGAAGCACTATACTGGTT
ACACTGAGGAGCAACTAAGCGTTTGTGCCAAAATCACGGTCAACCTTCATGCTGCTGCTGCTCCAGGAAGTAAGCTTAGGGCAGTTTTCAAGAAATTCTG
TAGCTTGGATCTTTGTGCTGTTGCTCTTCTTTCTCCAGGGAAGAACTTGTCAACACTGTCTTGAAATTCTAGTTTAGGTTTGTCTAGGGAGACAAACCTA
AACTAGAATTTCAAGACAGAGCTCATTTTCTTTTTTCCTAATTGAGTGTTGCCACAACCTTTGGTGCTATGTACCTTTTGTGACACTGATTGAGCATCTG
ATCCTGATGACCATTGCTCTACTTCATGGGCTGATGTCTATTTAGGACCTGCTACAATTTCTGGGGGTTCAACGAAACAAACAGTTGTAGCCAGAAGCAC
AGCTGAAGAAGCAGAATATTGTAGTTTGGCTCAATTTACTACTGAGCTACTTTGGTATCAAACTCTCCTTCGAATTGCTAGCTCCTTTCTGTTACTCAAC
CTACTCTGTTTTTTATGACAATCAGAATATTGTTTCTCTCACAATCCTATACTGCATGCCAAGACCAAGCATATGGAATACCATTTCTCTTTAGTTTCAA
TTGTATATTTTTAGTCCTAGGATTAGTCTAAGCTCTGTGCTATATATAGTTTGTACACACAGTAGCTTAGCACCTTTTGTACATTTTACGGAAATCAATA
ATACAAATCTTTCAGATTCTC