Detailed information on CNT0000945 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0WKY2|CCR4E_ARATH, E-value = 1e-55

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000945

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5070.8140.5820.4441.0645.3483.715.7980.9940.8740.8650.7560.40800.225leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDVLYFGKTIYSSFCFKKIYSFKDLVCVTMLLSFVFLRQTMKKKNLTHVT*

>peptide 2 (30 aa)
MVRRKRGRPPPENSPSKRRRRRSPLECCKR*

>peptide 3 (43 aa)
MIAEKCQDSLKSRPTESSDHRLVMMLGCFLVFAKSFFFSYYLL*

>peptide 4 (60 aa)
MRNNVAQLCVFEANHEKKESDACNLTSIAPSTGKRRFVVGNIHVLFNPNRGDIKLGQTFT*

>peptide 5 (50 aa)
EPEQLWCGASVGGLHRKILRPNGEEDVLRWNVVRDRFSLPKTLPIARSVF*

>peptide 6 (33 aa)
LNRSNYGAAQAWEASTGKFSVQTEKKTFSVGML*

>peptide 7 (47 aa)
MCCSTQIVVTSNWARLLLDKAYKLSQEWGDIPVIIAGDLNSVPQCHI*

Sequence

>CNT0000945
TTGAACCGGAGCAACTATGGTGCGGCGCAAGCGTGGGAGGCCTCCACCGGAAAATTCTCCGTCCAAACGGAGAAGAAGACGTTCTCCGTTGGAATGTTGT
AAGAGATAGGTTTTCTCTTCCAAAGACTCTTCCAATTGCACGATCTGTATTCTAACATTCCACATAGTTTCTTGGAGTGGGAAAGGTGGAAAAGGCTCAT
ACTTGAAGAGATTAATAACTATAATGCCAGCATACTGTGTTTCCAGGAGGTTGTTCATTTTAATGATCTAGATGATCTTTTCCAGAACAGTGGCTTTAAA
GGTGTTTACAAGGCTCGCACAGGAGAAGCACTAGATGGATGTGCTGTATTTTGGAAAGACAATTTATTCAAGCTTTTGCTTCAAGAAGATATATAGTTTC
AAAGATTTGGTATGCGTAACAATGTTGCTCAGCTTTGTGTTTTTGAGGCAAACCATGAAAAAAAAGAATCTGACGCATGTAACCTAACATCAATAGCACC
ATCCACCGGAAAAAGAAGATTTGTAGTAGGAAATATACATGTGTTGTTCAACCCAAATCGTGGTGACATCAAACTGGGCCAGACTTTTACTTGATAAAGC
ATACAAGTTGTCACAAGAATGGGGCGACATTCCTGTTATTATTGCTGGGGATTTAAATAGTGTTCCACAGTGCCATATATAAATTTCTGTCTTCATCAAA
GATAATGGGCTGAACAAAAAGGAATGAGGGAAAGGGGAACAAATTCCCTTGTTTGGGAGTTTGAAAATAGGTAGGATGTAAAAGGAATTCAAGAGCATCT
ATTCACCCTTTGTTCCTTTCAAAAACTCAATGTTTGTTACCCTGAAAATTGGTTGGAACTGGAGGAAATCAAAGGTTTCTTGCCCTTAATAATCTTACGA
ACAAAGGGAAAGTTAGCTTTGTTCCACTCCTTACCCTGCCTGTCCAATTTATCCCTACTTGTCCCATTCCATTCTATTATCCAAACACTGTTAGAGGTGG
GGCTTGTTCTTTGAGGGGAGAAGGCCATTAATGAGTATTCAGTGTTTATAAGTATTGCTCCATTTATTGCAGTTAGACATCCAATTACATGATCGCAGAA
AAATGTCAGGACAGCTTGAAATCCAGACCAACAGAGTCTTCAGATCATAGATTGGTGATGATGCTAGGTTGTTTTTTAGTCTTTGCTAAGTCTTTTTTTT
TCAGTTACTATCTGTTATAACTTCCCCTCCCGCTCCTCCTAATGAGCAAGGCAACCATCAATTATGAAACAGATTCACAATCATTTATTTGCAAGACTGT
AGATTATTGTTGATTGTTGATATTTATAATATGCTTTTTTATTGCTCTAAATGATAGTGTGTGCTTGTTTTACTTGAATCTCACTTTTCAATGCACATTC
AACTGAACTCTACACTCAAGGAGGATTGATGCTCAACTTAACATGATGACAATTCAAACATGCC