Detailed information on CNT0000954 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0015554, E-value = 8e-07 (S. tuberosum)

Expression of CNT0000954

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)8.94512.06712.4362.2681.7312.4843.161.142.542.4371.2152.7751.6672.490.863leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011121314

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILTSIYLVPILTLHQKTKSEKSNSTNSCSGNKEGY*

>peptide 2 (36 aa)
AYALNLSPHVHTIVHRETRLTPKLERQRESYLVSVG*

>peptide 3 (77 aa)
METDKLNFEDLYIAVLLVYNDINKYIPGPHFDPPSKDKVREVKQHQQLQWQQRRLLKVFRVLGNWCKRYPIQFMLPL*

Sequence

>CNT0000954
GCCTATGCTTTAAATCTATCACCACACGTCCACACCATAGTCCATAGAGAGACAAGGCTCACTCCAAAGCTTGAAAGACAGAGAGAGAGTTACCTTGTTT
CAGTTGGTTGATGTCCATACGATGGGACAAGTCTTTGACAAGTTAGAGGGCCAGAATGTGTGAAGTTTAGAGTTTAATTGTTTTGATATGCGAAATGGGA
GGACAAGGCTCAAGAGAGATCACAGTGGGGGAAGACCAATTAATGTTTGGATTTGGTTATGTGAGTCAACTTGAGATGTAGAATAGAAGGAAAACCAATT
AAAAAGAGAACAAGGAGAAAAAAATGACAGATGGGAATCATGGCAAAAAGGATAAGGAAGAGAAAGTATTAGAGCACGAACAGTTGCAGTAATTTTAGTA
GCTCCATCCAAGAATTCACTAATCGATTGTTTCAAAGAGGTTGATGACAACCAAATCAAAGATAGTTTGAGTTCTACTAGAATAAGGTAAGGAGTGGAGG
CAAAGGCAAATAAGGAAGATAACAGATCGAGTTTTTGACAAAGTAAAGAATCAAATGGAAACTGATAAGTTGAATTTTGAAGATCTGTATATTGCTGTTT
TACTTGTGTACAATGATATTAACAAGTATATACCTGGTCCCCATTTTGACCCTCCATCAAAAGACAAAGTCAGAGAAGTCAAACAGCACCAACAGTTGCA
GTGGCAACAAAGAAGGCTACTGAAGGTGTTCCGGGTGTTGGGAAACTGGTGCAAAAGATACCCAATTCAGTTTATGCTTCCCTTGTGACAATTGCAGCTG
TGTGGTTCCAAAAAAAGGCTCAGAGTTCTTCACTGTAGCCATTGCTGATCATGTGTTTCACACGGAATGATATATAGAATTCTCTTGATTGTACAAAAAG
GATTAAACTGTTTCCATATTAGTTGATAAAAAACAATTGTTGTGTTTTACATTTTGGACAAAAGATCAACTCTTGATTTTTCTGTCAGGTTATGCTATGC
ATGTAAATTAACTGTCTTCAATAAAATTGTATTACAGTTCCTGTTCCTCAGAAGGATAGATATGAACAATTATCTATTTTCAGTGCGCATAAAAGTTACA
CTTTATTCAGAATAAATTGATTCCTTACTCTATTATTTGTTAAAAG