Detailed information on CNT0000960 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9TKS6|MATK_SOYBN, E-value = 3e-73

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000960

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8771.05503.8340.8361.050000.3431.120.816014.4270.486leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLQNSFLIKMVMKRLDTIVPIIPLIRSLAKAKFCNVFGHPISKPVWANLSDFDIIDQFLRICQNFSHYY

>peptide 2 (40 aa)
WQCHFDIWSRPGTIHINQLSQHSFHFLGYFLSIRPNLSVV*

>peptide 3 (34 aa)
MYLAIPLVSRFGPIYLILILLTSFCGYAKIFLIIT

Sequence

>CNT0000960
TTGGCAATGTCATTTTGATATTTGGTCTCGACCAGGAACGATCCATATAAACCAATTATCCCAGCATTCATTTCACTTTTTGGGCTATTTTTTAAGTATT
CGGCCCAATCTTTCAGTGGTATGAAATCAGATGTTGCAAAATTCATTTCTAATAAAAATGGTTATGAAAAGGCTTGATACAATAGTTCCAATTATTCCTC
TAATTAGATCATTGGCGAAAGCAAAATTTTGTAATGTATTTGGCCATCCCATTAGTAAGCCGGTTTGGGCCAATTTATCTGATTTTGATATTATTGACCA
GTTTTTGCGGATATGCCAAAATTTTTCTCATTATTACAA