Detailed information on CNT0000966 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M2E2|SDR1_ARATH, E-value = 1e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000966

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6280.3361.20100.21.2535.8854.0470000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTVVFQIPNNIPCPKIKPITTFLTARFLIDIQHC*

Sequence

>CNT0000966
GGCATCACTGAAGACTTCTCTAGCCCATGATCCTTTTGGCAAACTCTGAATTTTACATGATTAAGCAATATGACCTCAAGAAAATTAAAGGAGACGAGAT
ACAATTATAAATTAATAGCCTACCTCTAACTGCCCCATAGTTGATGATACATTCACAATTCTCGGTGAATCAGATAACTGGAGGAGGGGCAGAAGGGATT
CTACAGTTGTTTTAGCACCATAGTAATTTATTTGCAAGCATTCTTTAGCCAACTCATATGATTGAGTGATTGCCTTTGTCCCATCTTCTGGTGCTGCCTG
CAGAATAATGACAAACTCAATACTCTATGACAGTAGTTTTTCAAATCCCTAACAACATCCCCTGCCCTAAAATAAAACCAATCACAACCTTTCTAACTGC
CAGATTTCTCATTGACATACAACATTGTTGAAATGCCAAAGCTCCAATCAGAATTAGTAAAAGTTTTCTTTTTTTTAAGTTCTTCTCTACTTTGACCACA
TCTATAGTGGATTTAGAATTTCAACATAAGATTTTAATAATCAAATTTCAGTGTATTATATTTATACAGGGCATGCTCGTCATAAGAGTTCACACCAAGC
TCTTCTCATAACCCAAAAAAGGAAAAGATACTCGCCCCACGCTTCAAGAGAAGTGAAGTGAATGAATCAGTGTCTTTAATTACAGCTCCAAGAATCCCAG
CATTGTTAAC

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G01630.2 Uncharacterized protein protein coding CNT0000966 350 224 CDS Trans
GLYMA03G01630.2 Uncharacterized protein protein coding CNT0000966 154 78 CDS Trans
GLYMA03G01630.3 Uncharacterized protein protein coding CNT0000966 350 224 CDS Trans
GLYMA03G01630.3 Uncharacterized protein protein coding CNT0000966 154 78 CDS Trans
GLYMA03G01630.4 Uncharacterized protein protein coding CNT0000966 350 224 CDS Trans
GLYMA03G01630.4 Uncharacterized protein protein coding CNT0000966 154 78 CDS Trans
GLYMA07G08040.1 Uncharacterized protein protein coding CNT0000966 1938 710 CDS Cis
GLYMA07G08090.1 Uncharacterized protein protein coding CNT0000966 1805 714 CDS Trans
GLYMA07G08090.2 Uncharacterized protein protein coding CNT0000966 1805 714 CDS Trans
GLYMA07G08100.1 Uncharacterized protein protein coding CNT0000966 324 236 CDS Trans
GLYMA07G08100.1 Uncharacterized protein protein coding CNT0000966 162 74 CDS Trans