Detailed information on CNT0000973 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P27480|LOXA_PHAVU, E-value = 6e-105

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0010461, E-value = 8e-13 (S. tuberosum)

Expression of CNT0000973

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVQSQHEYLTCDHKPIKESPHKFKELKDGL*

>peptide 2 (33 aa)
LPLDKIRRKGLISENPPLVNCRRHLHSKWPRQK*

Sequence

>CNT0000973
TTACCTCTTGATAAGATCCGCAGGAAGGGCTTGATCAGTGAAAACCCACCCCTTGTAAACTGCCGAAGACATCTCCACAGCAAATGGCCCAGGCAGAAAT
GATTGCTCAATAATGCCACCTGCATTGATGAGTGATTGTCTTGCGAGTCCATTGATGTTCATGGTGTCACGATAGTGAGGCAACAAAAGTTTATAAATAG
GGTGGAGCACACTAAGATGCCTGTTTGTTGCTATGACAAATGGTTCAATCACAGCATGAGTATTTAACCTGTGACCACAAACCAATAAAAGAATCACCTC
ATAAATTCAAAGAATTGAAAGATGGTTTATGATGACAATTGCAGAATTTATATATACCAGTGGCTCATGAGTTGATGATAGCAGGAGTCATTGACAACAA
CATATGCCTTGGCAATTAGCCAAATTGTACTTTCAGCACCTTGGTCTGCGGGCAAGACGACTCTACTAACGGCACCAAACTCATCTCCCCTAGGATGTGG
CAAACTTAATTCGATGGCCAATGGCTTTAAGGTGCCATCATCTTTCAAGAAAAGGATGGTCCTTGTGGCATAAGACTTTGCAGTGGGAAGGTCATTGATC
TTCCTCAGATATGCGATGAATGCATCATGGTGATCTAATATGAACAATCTGTTACCACTCAGTGCCTGTTGCACAAATATCATTATAACCATTTAGTGTC
ATGATTAATTGGGTATTCATATGTCTTTTTGTTATCAAATATATATGACTTACCTGTTCCACAGAGAGTCCACCAAGGTTGATCTCTAAGTGTTCTTTGG
TTATTGTACTAGTTTGATCACCATACACTGTGGGATCTAGCTTGCTCTTTGGAGGGAACACCTGTCATTTATTAATTAACATTATGAGGAAATTAAACAT
GATATACATTGAATATAATTCACATGGAAACCAAATTCATTGTTAGTACTAAGCAATAAAGCACTATTTACTTGAAGGCACTCAATTAGGCATGGATTAA
CACCAGCAAGCATCTCTCTTCCAAATTCTTCATCAGTCATCCATGCAGACTTACTAACTGCTCC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G00860.2 Uncharacterized protein protein coding CNT0000973 364 279 CDS Trans
GLYMA07G00920.1 Uncharacterized protein protein coding CNT0000973 151 113 CDS Trans
GLYMA07G03910.1 Lipoxygenase protein coding CNT0000973 2966 1064 CDS Cis
GLYMA07G03910.2 Lipoxygenase protein coding CNT0000973 2966 1064 CDS Cis
GLYMA07G03920.2 Lipoxygenase protein coding CNT0000973 1318 1096 CDS Trans
GLYMA08G20180.1 Uncharacterized protein protein coding CNT0000973 866 405 CDS Trans
GLYMA08G20190.1 Lipoxygenase protein coding CNT0000973 193 127 CDS Trans