Detailed information on CNT0000976 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SWH5|FUT1_ARATH, E-value = 5e-76

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000976

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKGDFSGNTQVELRNGSQNRPCLSLSNFTSITRSVSIA*

>peptide 2 (43 aa)
VSYLKMVVSIRIKKKKKKSLHRNTKSTTKFLQKMKTITATTYC*

>peptide 3 (35 aa)
MPQELPLHYDFFRLKFANPLVAVSYASRCSLKLDP*

>peptide 4 (54 aa)
MHDASSNPVVKSPPSNLSLSSRSGVDSVVELVKETFFGPADLGEREGKSREINK*

>peptide 5 (49 aa)
MEKVYEEKLCGTIGTASYLCMMLHQIQWLKVHLAICLCLQDLELTQLLN*

Sequence

>CNT0000976
TGTGTCTTATTTGAAAATGGTAGTCTCCATCAGAATTAAAAAAAAAAAAAAAAAGTCCCTACATCGTAATACAAAATCAACAACAAAATTTTTACAAAAA
ATGAAAACAATTACAGCAACTACGTACTGTTAACCAGCTTCAGACCATAACAATAATCCTTGCACTCCCTCAAATAGGGGAAAGAAGAAACAACATCTTT
GATAGGTTTTCCGTTGCAGTAATGCTTGGGAGGAACATGATAACAAGGCTCCGATGAGAAATCTCGTTCACAGGATGGAAAATGGGTGTCATTGTTGACT
AGCCTGTAAAGAAGCCACGGTTTCAAATTCCCCAATCCCTGAGCAACGTAGCCAAAAGTAGAGAGAGAGATACATACTCCGTAAATTATCTCCATACTCT
CTATGTAAAGATGCCACAAGAACTGCCTTTACACTATGATTTTTTCCGGCTGAAGTTTGCAAATCCACTTGTGGCAGTATCTTATGCTTCAAGGTGCAGC
TTAAAACTAGATCCATGACTGTTTGTTGTGGAGTAGAAACGGGACTAAATACTCTAATCTGTAAGCCTATCCGTTTATCTGCCTTGGCCAAGTGTTCCTG
ATAGTAATCGCTGATCAGTTTCCATGCCTCGTTTGAAGGGTGAAAAAGGTAACGCCCCAAACGGTGGAAAACTGTGTCTTTCTCTGGAAACATTTTGGTA
ACCTCCTGGTTGAAAAATGGGTTCATGAACAGAGACGGCACAAAGTATTGATCAGACTGCAAAATCAACAAAGGAACTTCCCGAAGAAGATATTGACTAT
GGTCACAGTGAAAAAATTTCTCAGGCTCACTGAGGGTGTGCTGTAGATTAATAAACAGAACTGATGAAAGGAGACTTCTCAGGCAATACCCAAGTTGAAT
TGAGAAACGGCTCGCAAAATAGGCCCTGCTTGTCTTTGTCAAATTTTACAAGCATCACTCGATCAGTGAGCATAGCATAAAGAAATGTTGCAGCCATGCT
AATCATTTGATTCCCCAAACCATTAGCAGGTGTCCAGATAAGGTACTTACACAATGTAGCTGCAGCACCTTTGTTCTTTGAGCGTACAATCTTTCTCATG
CTTCTGTCGTAAGCTCTACTATTAGGTCCGCACCTTCTGTGAATATCTTCATAGTTACGTAGTTTAGATATCAAATATGGAGAAGGTTTATGAGGAGAAG
CTTTGCGGTACAATTGGGACTGCATCCTACTTATGCATGATGCTTCATCAAATCCAGTGGTTAAAAGTCCACCTAGCAATTTGTCTTTGTCTTCAAGATC
TGGAGTTGACTCAGTTGTTGAACTAGTCAAAGAAACATTTTTCGGGCCTGCAGATTTGGGAGAGAGAGAGGGAAAATCAAGAGAAATTAACAAGTAGAGA
GGAAATGTCTAAAAAAAAAAATAGTAGCTAGCTCTAGCTATAATTTTACGAATTGTAAAACATATAATCCATACGCTTCGTACACACCTACTCTTGATGC
AATACTATTGTTAGTCGTTGTCGTTTCTTCTGAACCATTTTGAAAAATTCCTGGCAGCACCTTAACTTTGCCAAGTTAATTTATGGAATGAAACAAAGAG
TTAGAAAAAGGAAAACTTGAGAAGGCTCATATGCTAATAATTAAGGGCGTTTTTCACTATTATACGTACCATGCTCC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G02550.2 Uncharacterized protein protein coding CNT0000976 2246 812 CDS Cis
GLYMA08G23470.2 Uncharacterized protein protein coding CNT0000976 131 54 CDS Trans
GLYMA08G23470.2 Uncharacterized protein protein coding CNT0000976 773 436 CDS Trans