Detailed information on CNT0000986 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4JP36|HAP2_ARATH, E-value = 5e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000986

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.2330001.4361.341.2492.0471.37500leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.2

Peptides detected in this lncRNA

>peptide 1 (42 aa)
QTLSPSLAFCDTAVSLSRHCILRHVTAISSSPLVVTCHHRRR*

>peptide 2 (69 aa)
TNPFSLTSILRHRRLLVTTLHFATCHCHLLVTISRYVSPSTPLNLQLLQELVFITAVARLRYVLLLFSF*

>peptide 3 (72 aa)
MGVGKLFICMQSARSYSFSIGITEIPGKIISVSVPTFEALTQFGVATITTKNIGEVEASYSLMALLVFLFTS*

Sequence

>CNT0000986
CACAAACCCTTTCTCCCTCACTAGCATTTTGCGACACCGCCGTCTCCTTGTCACGACACTGCATTTTGCGACATGTCACTGCCATCTCCTCGTCACCATT
AGTCGTTACGTGTCACCATCGACGCCGCTGAACCTGCAACTGCTCCAAGAGTTGGTGTTCATCACTGCTGTCGCGAGATTGAGGTATGTGTTGCTTCTTT
TCTCATTCTGAGCATTAAGATACAATCCATTGAGGTACGTGGCGGCTTGTTTTCTGATTCTGAGCACCCATTGGTATCAAAAAGTTTGAATCCTCTTCAT
TACTCACTCGAAGATACAATCCGTTGAGGATCGATCCCTACCACCTGCTGAAGTTGATAAGCTATTTGATACTGCTCCAGAATGGGTGTTGGGAAATTAT
TTATTTGTATGCAGAGTGCTAGGAGTTATTCTTTCTCCATAGGAATTACAGAGATCCCAGGAAAGATAATAAGTGTAAGTGTCCCTACATTTGAAGCCCT
AACTCAATTTGGTGTTGCTACAATCACAACTAAGAATATCGGTGAGGTGGAAGCGTCATATAGTTTGATGGCACTACTTGTGTTCTTGTTTACATCGTGA
TCACGACA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G21790.1 Uncharacterized protein protein coding CNT0000986 148 86 CDS Trans