Detailed information on CNT0000998 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80934|Y2766_ARATH, E-value = 2e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004765, E-value = 2e-12 (V. vinifera)

Expression of CNT0000998

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00003.4220.861.3463.78501.1241.2230.6680.5771.9690leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (67 aa)
GGGVMSIKFINNKNKIPECRLLQHQIYLWFWFQSGEAHHPSLQVVPEDLHLCLASHQPWLSIESEETW

>peptide 2 (46 aa)
MQTSATSDLLMVLVSVWRSSSSFPTSSSRRPPSLSCKPPALAQYRK*

>peptide 3 (43 aa)
GEVLCPSSLLTIKIRYLNADFCNIRSTYGSGFSLEKLIILPYK*

Sequence

>CNT0000998
TGGGGGAGGTGTTATGTCCATCAAGTTTATTAACAATAAAAATAAGATACCTGAATGCAGACTTCTGCAACATCAGATCTACTTATGGTTCTGGTTTCAG
TCTGGAGAAGCTCATCATCCTTCCCTACAAGTAGTTCCCGAAGACCTCCATCTTTGTCTTGCAAGCCACCAGCCCTGGCTCAGTATAGAAAGTGAGGAAA
CATGGAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G15960.1 Uncharacterized protein protein coding CNT0000998 592 207 CDS Cis
GLYMA18G39933.1 Uncharacterized protein protein coding CNT0000998 486 183 CDS Trans