Detailed information on CNT0001001 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001001

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.36400.299001.3084.0961.9210000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MLIITTRVKFLSNSSGNLLKGDHFKDLSVGGHLQGMIYPQELTLLILNMKIHNQKSKHRRFHSAVLLPSTS

>peptide 2 (57 aa)
FILVLEFILLAFSTVQEIRAWSPADCTPRATLLVSEHAQNYSRILRELTLNLYANKK*

>peptide 3 (35 aa)
FYFGPRVHPISFFHRAGDTCVVPCGLHATSNSSCF*

Sequence

>CNT0001001
ATTTTATTTTGGTCCTAGAGTTCATCCTATTAGCTTTTTCCACCGTGCAGGAGATACGTGCGTGGTCCCCTGCGGACTGCACGCCACGAGCAACTCTTCT
TGTTTCTGAACACGCTCAAAATTATTCAAGGATCCTAAGGGAGCTTACTCTCAACTTATACGCCAACAAGAAGTAAACAAGGAGACACAAGAAAATGCTG
ATCATCACAACAAGAGTGAAATTTTTGTCGAATTCTTCAGGCAATCTACTCAAAGGAGATCACTTCAAAGATCTATCAGTAGGGGGTCATCTACAGGGAA
TGATTTACCCACAGGAGTTAACGTTGCTGATCCTGAACATGAAAATTCATAACCAAAAGAGCAAGCACCGGAGGTTCCACTCAGCCGTCTTGCTTCCCTC
AACAAGCC