Detailed information on CNT0001009 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VZF1|AEE7_ARATH, E-value = 2e-135

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001009

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLYLPSSCLSAGRLAPFFICPCNHCCLQY*

>peptide 2 (35 aa)
MRMDNCKTITIVYLVVKENNSQQSIHYFLTTQQCT*

>peptide 3 (44 aa)
MPERTEGGGAAPAVFTCTTWGRGRMVSSAGALISVLRTTGAAQK*

>peptide 4 (40 aa)
MVFVFTTARPSKPMYLTPCLALSRAWFSGGSDSHSGFQAQ*

Sequence

>CNT0001009
CGCCGAGATACTGGACTACATGTCAGCCAATTTTCAGGAACTTAAATCTTGGAGTTTATGGAAGACTTTTATCTGAACATTATCCCTGACCCCAAATTGC
GTCACATAATGGAGAAAAATACACGTTAAAAATTATATAATGGAAGCCAGGATGGATTTATTGACTTCAAAATAGATAAGTGACACGTTGGTCTTATCCA
ACAACTACTTTTGAACCACATATAAAAGGTTCGGCTATATTATTATAGATAAGTATGCAGAATCCCAATCACAAATAGGCTATCTCAATATGTTTATAAA
GTACTCAATATGTTTATAACTAGTTCGTTTTTCGTCATGATCATTTCAATATGTTTATAACTTGCTCAACTTTACAGGTCCCATCTCTTTTGCCTTGGCC
CTCAGTATATGCTTCTGTATCTTCCCAGTAGCTGTCTTAGCGCAGGGAGACTCGCCCCATTTTTCATCTGCCCTTGCAACCACTGCTGCCTCCAGTATTG
AAGGATGTGAGTAAAGAGTATTCTCTATCTCTACACTGCTGATATTTTCAGCACCAGAGATTATGATGTCCTTTGATCTGTCTTTAATTTCTATATATCC
ATCTGGGTGCTTCACAGCAAGATCCCCAGAATGAAACCATCCATTTGCAAAGGTCTCCTCGTTAGCCTTAGGGTTCTTTAAGTAGCCTTTCATCACAGAA
TTACCCCGCATCACAATCTCACCAACAGTTTTACCATCAGCAGGAACAGGTTCCATGGTTTTTGTGTTCACAACAGCCAGGCCTTCCAAGCCAATGTACC
TAACACCTTGTCTTGCATTGAGCCGGGCTTGGTTTTCAGGGGGAAGTGATTCCCATTCTGGTTTCCAGGCACAGTAGACAGAGGGGCCATAGGTTTCTGA
GAGACCATAAGTGTGTGTGACACGAAATCCACGTTCAGACATGCCGGAAAGAACAGAAGGAGGAGGTGCAGCCCCAGCTGTATTCACATGCACAACATGG
GGTAGAGGAAGAATGGTGTCCTCAGCTGGGGCATTAATTAGTGTGTTAAGAACCACTGGTGCTGCACAAAAATGAGTCACTTTATACTTGGCAATGGCTC
CATACACTGCCTTCGCTGTTACCTGAGTAAACACATGACGGAAAAATGAAATGAGAATGGATAACTGTAAGACTATAACCATCGTTTATCTCGTTGTTAA
AGAAAACAACTCTCAACAAAGTATACACTATTTCTTAACAACACAGCAGTGTACTTAAACATATTCTGGTCAAAGAACCTTGTTATCAGAAAGCCACAGT
GTATTCAAGTTGAGATGAGTTGATTCACTTAAGTGAGCCAAACTCCCTTACTGCCTTTTCTTTTTTTTTATAAAACTCAAAACCAAAACCTTGCTTTAAC
CAAGCTCCTTGCTACTTGTGTTGGTTTTGTTTAAACATATTAGCTTCAAGCAGAA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G37100.1 protein coding CNT0001009 2676 934 CDS Cis
GLYMA07G37110.2 Uncharacterized protein protein coding CNT0001009 1456 637 CDS Trans
GLYMA17G03500.1 Uncharacterized protein protein coding CNT0001009 1933 933 CDS Trans