Detailed information on CNT0001019 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZNS6|RCI2B_ARATH, E-value = 3e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006974, E-value = 2e-21 (V. vinifera)
CNT0022924, E-value = 2e-25 (A. trichopoda)
CNT0016883, E-value = 1e-07 (S. tuberosum)

Expression of CNT0001019

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)10.09111.02514.611122.06913.5128.2297.04411.5121.6821.851.2812.5981.55353.00954.29leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0102030405060708090100110120130

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSWAFLSFNSDISVSLIYRQCCHILMFCF*

>peptide 2 (104 aa)
MLHPLAVKGSSSVTFQFELFHFHFFRKSCNYFLRKKVSKLRKSRETKMAGDGAATCIDILLAIILPPLGVFLKYGCQVEFWICLVLTLFGYIPGIIYAVY
AITK*

>peptide 3 (53 aa)
MHRHPPCHHSPSSWSLSQIWLPGGVLDLFGADPFWLYTWNYLCCLCYHQVITL*

Sequence

>CNT0001019
TTGCAATGAAAAGATGCCACGTTGGTCCATGGAGTGTGTACGTGGCTTATAAATAAGCATGCTCCACCCCTTGGCAGTTAAAGGCAGTAGTAGTGTTACT
TTCCAATTTGAATTGTTCCATTTTCATTTCTTTCGCAAAAGTTGCAACTACTTCCTCAGAAAAAAAGTTTCTAAGTTAAGGAAATCCAGAGAGACAAAAA
TGGCCGGTGACGGTGCAGCTACATGCATAGACATCCTCCTTGCCATCATTCTCCCTCCTCTTGGAGTCTTTCTCAAATATGGCTGCCAGGTGGAGTTCTG
GATTTGTTTGGTGCTGACCCTTTTTGGTTATATACCTGGAATTATCTATGCTGTCTATGCTATCACCAAGTGATCACCCTTTAACTTTGTGTGGACAATA
AACAAATGTCATGGGCGTTTCTGTCTTTCAACTCAGATATTAGTGTTTCTTTAATATATCGCCAATGTTGTCATATTCTTATGTTCTGTTTTTAAAACCC
CTTTTGTTCTTAGCTTAAGCGAGAGTGGAGTGTGTAGCTTACTAGCTTGTGTATGTAGTCTCTAGATTTGGTAATTGATTTGAAATACACAATTTCATTT
GTATCAACGATCTTGTTCATGTATCTTATGTAAACTGTGCTATTCATTACTTTCAAATTAATAAATCGGATTTATTCTTATTATATATTGTG