Detailed information on CNT0001032 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022393, E-value = 2e-10 (A. trichopoda)

Expression of CNT0001032

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5080.5440.5564.4450.3230.6090.1590.29800.2650.1440.15800.9291.879leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCSCYAAELQRLDRAQMLIKTPRHPTIQHVVAL*

>peptide 2 (29 aa)
CEDLQNRLDLLRKQSVGCLGDYHVLLLCG*

Sequence

>CNT0001032
TTGTGAAGACCTCCAGAATAGGCTTGATCTTCTGAGGAAGCAATCTGTGGGTTGCTTAGGAGATTATCATGTGCTCCTGCTATGCGGCTGAACTTCAGAG
GCTAGACAGGGCACAAATGTTAATCAAAACTCCACGGCACCCTACTATACAACATGTTGTGGCACTGTAGATTAATGGGGTGGAGTACACGGTCCATTTG
GTAAAGGAGACATGCTACAACCCATGTAGGCACAAATGTTTCACGGGGAGTCTGCTATAGTCTTCGGATAGTCTTCGGATGAGGTAAGCTCCGACGAGAG
TGACTTAGGCTCGGACCAAACCCAGCCAGCAATAAAGTAGTAAATCGTGGACAAACAAAACTAGATGGGATATAGCTGCTGGTGGAGTTCACAGAGTGTC
TCAGCTGACAACCTATGAGGTTAAGGGCACGAAGGAGACAGCAGGAAGCAGAAATGGGAAAATGACAGGTAGGGATATAGCGGAAAGGGGAAAAAGGCCT
GGGATTTTGGAAGAGAAGTCAAAGAAATGAAAACAACGAGCAAGAAATGGGTTCATCTATGTCAGATAATTTTGAATTAAAGGGGAGGGTCTTGTGATGT
CCCAGATGCAGAGGAGGGTGTTAGAAAAAAGGATGGAAGTTTGAAAAAAAAAAGAAAGGAAAAAAAAAAGAAAAAAAAAATTTCAAATCTCATATCGCTC
AGAATAAACACTTCAATAGTGTTTCACTCCCTGTATATAGAGAGTTCATTTCTTCATTTTTTCTTGTCCTTGAGAAGCATTTCCTCAACTTTTCTTTCTC
CCTCCCATTTTTCAGCCGATGCATTTCCGGCAAACTTCTCCCTCTTTTTTTCTGTCGCTCTATAATTTTGATTGGCT