Detailed information on CNT0001034 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2HXL0|RBOHC_SOLTU, E-value = 3e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001034

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3242.5620.06400.4461.21201.5744.2713.1722.9193.1163.44200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SSLLCAIPSLRPSAFFSSYPPTLHTDHSLSVSSIT*

>peptide 2 (36 aa)
MKFLLHGEDKEGVLAQVLVIFWGFSHAIKKKNTFWT*

>peptide 3 (29 aa)
TPHYSAPYPHYVRLPSFLHTLPLCTLTIP*

>peptide 4 (52 aa)
MNSSLTSRFGFSSTASHEHASEEAKVCDQSEQVEAADQTKESGSISESQPQL*

>peptide 5 (31 aa)
MVLRKPRIWSFKLYNLFRKFLNWPRIKMLSI*

>peptide 6 (30 aa)
MVLDEFEKEELCGQNIAEAMNIYILRYGYE*

>peptide 7 (52 aa)
MSMQAKKQRYVISLNKLKPRIKPKNQVLFRNLSLNFDWLKIKIKSLLMNCVF*

>peptide 8 (36 aa)
MAQEANCPSYILYNLFFILALFAQCLGTKPHPSCFK*

>peptide 9 (45 aa)
MDMNNEALNMSKDGGLSNSAILTSMQNIRWQTLYRNSPHHLKEEG*

>peptide 10 (65 aa)
MVDKDADGKITEEEIKEVQYKIINSPLTVWPYFIWKKIDRQPWRCSCCMDQRKLQEEKNRYTTLG*

Sequence

>CNT0001034
ACTCCTCATTACTCTGCGCCATACCCTCACTACGTCCGTCTGCCTTCTTTTCTTCATACCCTCCCACTTTGCACACTGACCATTCCCTAAGTGTATCCTC
CATTACGTAGCTTCCACTGGTCGACCCACCATACCCTCACACTTGTAGACCCACCGTTCCTCTGCCATCCTTTCTTGAAGCTTCACCCTTTTCTCTGTTT
CACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGCTGATTCTGCTTCAAACCAATTTTAT
GAATTCATCATTGACTTCGAGATTCGGGTTTTCTTCAACGGCCTCGCATGAGCATGCAAGCGAAGAAGCAAAGGTATGTGATCAGTCTGAACAAGTTGAA
GCCGCGGATCAAACCAAAGAATCAGGTTCTATTTCGGAATCTCAGCCTCAACTTTGATTGGTTAAAAATAAAGATTAAAAGTTTGTTAATGAACTGTGTT
TTCTGATTCAGATGTGGAAAAATGATAGAGAGACTTCTAATTTACATTACTTGAGGGAATAAGTAGGGGAGAGGTTAATACTTCGAGGATCAAATTGATA
GTTCATTCTTAAAATAAAAGGGTACATTTTTTCATAAAAGATTTTTTTTTTAAGTTTCCATATGGACTAGGAATTGAAGTATGAAGTTTTTAAAGATTAG
GTTGTGGTTCTAGATGAATATGTTGTTAGATGGTCCTAGATGAGTTTGAGAAGGAAGAACTATGTGGTCAAAATATTGCTGAAGCAATGAACATATATAT
CCTTAGATATGGATATGAATAATGAGGCATTGAATATGAGTAAAGATGGTGGATTATCGAATTCTGCTATCCTCACATCAATGCAGAACATAAGGTGGCA
GACACTGTACAGAAACAGCCCACACCACCTAAAGGAAGAAGGGTAACATTGAGATATTAAAAATTAGGGAGGTGTAGGTAGAAGTGATGGCACAGGAAGC
CAATTGCCCCTCATATATATTGTATAATCTCTTTTTTATCTTAGCTTTATTTGCCCAATGCTTAGGTACCAAACCCCACCCATCTTGCTTCAAATGATTG
ATAGGAATGTAAATATAGACTAGTTTCTGAATTCTGTGTCTGCATATCACTGGATTTGATTTGATTGTAGGGTTGAACAAGGAGTCTGAGGCTTTTGCAG
AAAAGCTTTTTGATACTCTTGCTAGGCAGAGAGGTATTCAGGGGGGTTCCATTAACAAGATCCAGTAGAAGGAATTCTGGGATCATATTTCTGACCAGAA
CTTTGTTACTAGGCTCAAAACATTCTTTGACATGGTTGATAAAGATGCAGATGGCAAAATCACCGAGGAAGAAATTAAAGAGGTACAGTACAAAATAATT
AATTCACCACTAACTGTTTGGCCATATTTTATTTGGAAAAAAATAGATAGACAACCCTGGAGATGCTCTTGTTGCATGGACCAGAGGAAACTACAAGAGG
AAAAAAATAGATACACAACCTTGGGATGAAGTTCTTGTTGCATGGGGAGGACAAGGAAGGTGTTTTGGCGCAGGTTTTAGTTATTTTCTGGGGGTTTTCC
CATGCTATTAAAAAAAAAAACACCTTCTGGACATGAACTGGACATGAAGAATCTGCACAATAACAACTAGGTAACAAATGCTCCCTTCCTCTTTATATTT
GTTGAAGTCCTTGTGGCGGGCCACGGCCTACCAACAATACAAACTTTACAAATAATAATCCACACGTAAATGGTTTTACGTAAACCTCGTATTTGGTCCT
TTAAGCTCTATAATTTGTTTCGGAAATTCCTGAATTGGCCTAGAATAAAAATGTTATCGATTTAGAATATGCTTGGATATACTTCTCAGAGACACTTATA
AGAACGAG