Detailed information on CNT0001035 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001035

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7832.503000.4251.42401.3064.223.2583.2914.012.38800leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SSLLCAIPSLRPSAFFSSYPPTLHTDHSLSVSSIT*

>peptide 2 (63 aa)
MNSSLTSRFGFSSTASHEHASEEAKVCDQSEQVEAADQTKESGLIKMQMAKSPRKKLKRYSTK*

>peptide 3 (31 aa)
MVLRKPRIWSFKLYNLFRKFLNWPRIKMLSI*

>peptide 4 (29 aa)
TPHYSAPYPHYVRLPSFLHTLPLCTLTIP*

>peptide 5 (36 aa)
MKFLLHGEDKEGVLAQVLVIFWGFSHAIKKKNTFWT*

Sequence

>CNT0001035
ACTCCTCATTACTCTGCGCCATACCCTCACTACGTCCGTCTGCCTTCTTTTCTTCATACCCTCCCACTTTGCACACTGACCATTCCCTAAGTGTATCCTC
CATTACGTAGCTTCCACTGGTCGACCCACCATACCCTCACACTTGTAGACCCACCGTTCCTCTGCCATCCTTTCTTGAAGCTTCACCCTTTTCTCTGTTT
CACGAAATTCCCAACCTTTCTCCACCACCCTGTCCAATAACTTCCATTCCCTCCTTCACCCATCTCCCAACAAGCTGATTCTGCTTCAAACCAATTTTAT
GAATTCATCATTGACTTCGAGATTCGGGTTTTCTTCAACGGCCTCGCATGAGCATGCAAGCGAAGAAGCAAAGGTATGTGATCAGTCTGAACAAGTTGAA
GCCGCGGATCAAACCAAAGAATCAGGGTTGATAAAGATGCAGATGGCAAAATCACCGAGGAAGAAATTAAAGAGGTACAGTACAAAATAATTAATTCACC
ACTAACTGTTTGGCCATATTTTATTTGGAAAAAAATAGATAGACAACCCTGGAGATGCTCTTGTTGCATGGACCAGAGGAAACTACAAGAGGAAAAAAAT
AGATACACAACCTTGGGATGAAGTTCTTGTTGCATGGGGAGGACAAGGAAGGTGTTTTGGCGCAGGTTTTAGTTATTTTCTGGGGGTTTTCCCATGCTAT
TAAAAAAAAAAACACCTTCTGGACATGAACTGGACATGAAGAATCTGCACAATAACAACTAGGTAACAAATGCTCCCTTCCTCTTTATATTTGTTGAAGT
CCTTGTGGCGGGCCACGGCCTACCAACAATACAAACTTTACAAATAATAATCCACACGTAAATGGTTTTACGTAAACCTCGTATTTGGTCCTTTAAGCTC
TATAATTTGTTTCGGAAATTCCTGAATTGGCCTAGAATAAAAATGTTATCGATTTAGAATATGCTTGGATATACTTCTCAGAGACACTTATAAGAACGAG