Detailed information on CNT0001037 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 4e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0045095 in A. thaliana

Most similar lncRNAs:
CNT0045095, E-value = 5e-41 (A. thaliana)

Expression of CNT0001037

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MLFKFRLWLEWSSLGHHDFDKLLIVDLSITVNIGLTDHLIHLLVRQLLPKICHDMAELSCRDETILILVKHTGKPP*

>peptide 2 (44 aa)
MDLMGIEFSSKLICPVPLLFICFSNLGYGWNGPHLAIMTLTNSS*

Sequence

>CNT0001037
AATTCAAAATGATCATAATAACAATCACATGGCAAAAGATATAAAATATTAACAGCATTAGCCACCCACATTTAAAAAAACACAAATGCATCCAATTGTT
CTAGGTTCATAATAATAATAATAATAACCAAAAGAAGATGAAAACGGAGAGTAACAAAGCATGGTGAGACACAGCTACCGAAGCTACTAAAAACAAGGGA
CAGAGCAAACAAGTAGGATAACTAGGGAGCAGAGAAGTAGTAGCAATTAAAGCAAACAAGAAAAATAGACACTCAACTAACAAAACCTAATAACCCCAAA
TCAAGATGGACCTAATGGGAATAGAATTCTCATCAAAACTTATCTGCCCTGTCCCTCTTCTCTTTATATGCTTTTCAAATTTAGGTTATGGTTGGAATGG
TCCTCACTTGGCCATCATGACTTTGACAAACTCCTCATAGTTGATCTGTCCATCACCGTCAACATCGGCCTCACGGATCATCTCATCCACCTCCTCGTCC
GTCAGCTTCTCCCCAAGATTTGTCATGACATGGCGGAGCTCAGCTGCAGAGATGAAACCATTCTGATCCTTGTCAAACACACGGGAAAGCCTCCTTAAGC
TCCTCCTCTGAGTCGGTGTCTTTCATCTTGCGAGCCATCAGGTTGAGGAACTCTGGGAAATCGATGGTTCCGTTGCCATCAGCATCAACCTCGTTTATCA
TATCCTGCAGTTCTGCCTCAGTTGGGTTTTGACCAAGTGACCTCATAACAGTCCCAAGTTCCTTGGTAGTAATGCAACCTA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA20G10820.1 Uncharacterized protein protein coding CNT0001037 1128 378 CDS Cis