Detailed information on CNT0001040 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001040

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000000.2420.22700.2020.220.24000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.020.040.060.080.10.120.140.160.180.20.220.240.26

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIFLMTSGLCLSPLYLPLAFLFQYYSIAESIVAALFLS*

>peptide 2 (60 aa)
MADNICSFGQLSSASSALLVELVIEIPQMLRFDDFPYDLWFVFVSLVSAFSISVSILFHC*

Sequence

>CNT0001040
GGTTTGGGTTGGCATAGCAGCCATGGAAGGCAACCATTGAAGCTCAATGAAAGCACCAAATTGTTATGAGCTGAGATCAACTCAATGAATTTCCATAGTG
TTCGAGGCCTAGGAACCTCCTAAGAGAAAGATGAGGGAAGGAAAGACTTGTATTATTTTCTACTTCCATTCTATTACATGATTCATTCATATATATAAGT
GCCAAATACTAGAGGTTGTTATCCCATTCTAGCAAATTCTAACAAACAACACTAACAGAAGTTGGCAAATAACAGAAAAGTATAAATGGCAGACAACATA
TGCTCCTTTGGCCAATTAAGTTCTGCCAGCTCAGCACTCCTTGTCGAATTAGTTATAGAAATCCCTCAAATGTTGAGGTTTGATGATTTTCCTTATGACC
TCTGGTTTGTGTTTGTCTCCCTTGTATCTGCCTTTAGCATTTCTGTTTCAATATTATTCCATTGCTGAGTCCATTGTTGCTGCTTTATTCCTTTCATAAC
ATCTCGTCATCTCCACTGTCTTCATTCTTCTTGAGACGGGTAGTACCACCTTCTTTCGTGATGGGCAGTTTCATTG