Detailed information on CNT0001043 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SJ85|Y2474_ARATH, E-value = 4e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001043

Peptides detected in this lncRNA

>peptide 1 (38 aa)
RNSLVSANVSKLQAIVSRQYSRILQTPYLYKNKFNRHK*

>peptide 2 (46 aa)
MSASINQWQSSSGDTISKCGNKTSATARLRGNNKYLEATSNISSAC*

>peptide 3 (48 aa)
MNALLLFEVSQCQTRSQKNLSDTCLAHVKHFTLSVHLKDYFCWLEHLS*

>peptide 4 (54 aa)
MFRNYKQLCLDNIPESCKHHTCTRTNSIDTNKSKYDQVHFDYYICIFSPYCIKQ*

>peptide 5 (33 aa)
MSDTFPKKPLRHLSGTCQTLHIKCPLKRLFLLA*

>peptide 6 (31 aa)
MHFSYLKCHNVRHVPKKTSPTPVWHMSNTSH*

Sequence

>CNT0001043
CCGAAATTCTTTAGTATCAGCAAATGTTTCGAAATTACAAGCAATTGTGTCTAGACAATATTCCCGAATCTTGCAAACACCATACCTGTACAAGAACAAA
TTCAATAGACACAAATAAATCAAAATATGATCAGGTACATTTTGATTATTATATATGTATATTTTCACCATATTGCATAAAACAATGAGAACAAAGATCA
CTTATCAAGTGGATAACAATCTTCGATGAATTTTTTGCAATCATAATTTCCAAAGGATAACGATCTTTCATGAATTCGCTTTGATCCTCCCTTTTGAATT
TAATCTTCCTCATGATGCAAAGTGAATTCTAGAATTTTTAATATCCTAGACCATCTCATTTAATTTTAGATACTCTTGAAATCTTTTCAGAACAGAAAGC
GTTCTAGAGCATATATGAATAGAAACACAGCTAAACAGATTCCCCATAAATGATTTAATAGTTATACCACATGGATAAAGAATATTTACTTGTGTTGGAT
TCAAAAAATTTCGTAACTGCACACAAGAAAGGTTAGGAAATATTAACCAGATCACTACACCAGTAGACATTTCACTAACTTATTTGGATAAGCAACTTAA
ATAAGTACTAATTCAAGTAGTGCTTAACTTATTAAATAAGCTATAATAACACAAGCACAGTCCAAAATAAACTGAAATGAAACACATTGAAGCATGAGAT
TCAAAAAGTACTGAAACAATCATATAAATATAATGAGAAAACAAAACAAAAAATAACAAAGGAAGAATCCCATCCTATGAATGCACTTCTCCTATTTGAA
GTGTCACAATGTCAGACACGTTCCCAAAAAAACCTCTCCGACACCTGTCTGGCACATGTCAAACACTTCACATTAAGTGTCCACTTAAAAGATTATTTTT
GTTGGCTTGAACACTTAAGCTGACACCTCCACACAAGTCGGACACATTAAGTGTACCAGTATCTCATATTAAAGATATTAATTGTGCAAGAGTGTCAGTG
TCTATGTTAGATTTTGTGTCTCATAGATCTCATCCCTCCTGTGTAAATATAAAACAAGCAATAATATGTGCAGGCCAATGTATAACATAACTAACATCAG
AAGCGTTAAAAAGACTTAGTGAAGATGGTCCATGCTAATAGATTGAGAATGAGGAGATTGGCAGAAAAGCAAATACATGTCTGCTAGTATTAACCAATGG
CAAAGTTCTTCAGGTGACACCATTTCCAAGTGTGGCAACAAGACATCAGCCACCGCCCGCTTGAGAGGAAACAATAAGTATCTAGAAGCAACATCCAACA
TTTCCTCAGCCTGTTGAAAACATATTAATGTTAAACAACAGAAAGACAAACCACTATTACAGAAATTATATGGGTGTATAAAAACCTGATCTGGATTTAT
ATCCTGC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA20G13750.1 ankyrin repeat family protein protein coding CNT0001043 1318 481 CDS Cis
GLYMA20G13750.1 ankyrin repeat family protein protein coding CNT0001043 872 335 CDS Cis