Detailed information on CNT0001058 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001058

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3291.281.0903.0411.5921.6191.2852.7333.2273.1713.2163.3111.4581.179leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMMTTNLGKPVLHLTQNAEIHHCLTHWSRLIQTIHFL*

>peptide 2 (31 aa)
MSELQKIYGAAFVAGQVCPGGFLLFIVVIIY*

>peptide 3 (64 aa)
MEAIGSVDDLLDFSLDIGEKDDDDDKPRKACPSLNSKCGDPSLFNPLVQVDPNHSFSVSFIFPF*

>peptide 4 (55 aa)
MVLTDFYLFFYWHQCIGNPRLLNEQYILLFHTLVMSLWFQGFHIVQPYVPLFRRK*

>peptide 5 (88 aa)
ITKEKLRQQNKIKTKTKNKNGNNKNKKSPHEPSLIPYTCLTISCSLNSLLSGVSSLSLSFCCCNSKYTKREKLGWKPLVLWMTSWIFH*

Sequence

>CNT0001058
ATCACTAAAGAAAAATTAAGACAACAAAATAAAATAAAAACAAAAACAAAAAATAAAAATGGTAATAATAAGAATAAAAAATCCCCCCATGAGCCTTCCC
TAATCCCCTACACGTGCCTCACCATCTCTTGTTCTCTCAACTCTCTTCTTTCTGGGGTTTCCTCTCTCTCTCTCTCATTCTGCTGCTGCAACTCAAAGTA
CACAAAACGTGAAAAGCTGGGATGGAAGCCATTGGTTCTGTGGATGACCTCTTGGATTTTTCATTAGACATAGGTGAGAAAGATGATGATGACGACAAAC
CTAGGAAAGCCTGTCCTTCACTTAACTCAAAATGCGGAGATCCATCATTGTTTAACCCATTGGTCCAGGTTGATCCAAACCATTCATTTTCTGTAAGTTT
TATATTCCCATTTTAACCTTTTAGGAGTGTTTGAGTCCATGAAAAGTATATTGGTTTTTGATTGGGTTATGAGTTGTTACTTCTTATTGCTTCTGTGATT
GGAAAAAGAGAAACAATCAGAAAAATATTTATGAATTGTGCTTTGGTTGGAATTAGCTGGAATTGGAATTTGAAATGGGCTGGCTTGGATGAGTGAATTG
CAGAAGATATATGGTGCAGCTTTTGTTGCAGGACAAGTTTGTCCTGGTGGATTCTTATTGTTTATTGTGGTGATCATATACTAGTGCAGAAGATATATGG
GGTATCTTTTATTGCGGTGATCACATACTAGCTCAGGGGTCTCTGAAATTTTAAAACAGCTAGTGAAACTTAAGTTTTCTATGTGAGTGTTCACTGAAAT
GGGGGTATTGTTCTCTTATATTAAATGGTGCTGACAGATTTTTACTTATTTTTCTATTGGCATCAATGTATTGGAAATCCTAGATTGTTAAATGAACAGT
ATATTCTTCTTTTTCATACACTTGTGATGTCACTATGGTTCCAAGGTTTCCATATTGTGCAACCGTATGTTCCTCTGTTTAGAAGAAAATAAAATAGTGT
GGAAATTATTTTTTTGATCTATAGGTTGCGCATCCATGACTAGTTGCATGGGTCTGATGCCTGTGTTGACTTGAAACCCCCCCTTTTCTTTTACTACGAA
AGTTTAACACCCCCCCCA